Os11g0158300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pentatricopeptide repeat containing protein.
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Os11g0158300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pentatricopeptide repeat containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 135.87 | 0.548 | 3.79 | 0.516 | 0.764 | 2.3 | 0.761 | 0.724 | -0.196 | 7.59 | 89.93 | 91 | 21 | -- |
| 136.41 | 0.544 | 3.8 | 0.516 | 0.777 | 2.33 | 0.976 | -- | -0.187 | 7.51 | 90.01 | 89 | 20.9 | -- |
| 137.17 | 0.545 | 3.79 | 0.536 | 0.76 | 2.32 | -- | 1.17 | -0.196 | 7.59 | 90 | 91 | 21 | -- |
| 138.87 | 0.549 | 3.8 | 0.527 | 0.782 | 2.43 | -- | -- | -0.19 | 7.5 | 90.38 | 79 | 20.6 | -- |
| 154.44 | 0.579 | 3.8 | 0.458 | -- | 2.72 | -- | 1.15 | -0.167 | -- | 89.28 | 158 | 21.9 | -- |
| 220.58 | 0.696 | 3.84 | 0.63 | 1.56 | -- | 2.08 | -- | -0.477 | 6.33 | -- | -- | -- | -- |
| 231.32 | 0.712 | 3.85 | 0.656 | 1.57 | -- | -- | -- | -0.483 | 6.34 | -- | -- | -- | -- |
| 156.42 | 0.583 | 3.81 | 0.458 | -- | 2.79 | -- | -- | -0.147 | -- | 89.59 | 166 | 22.1 | -- |
| 145.79 | 0.562 | 3.81 | -- | 0.797 | 2.58 | -- | -- | -0.253 | 7.52 | 90.81 | 68 | 20.2 | -- |
| 359.7 | 0.886 | 3.88 | 0.698 | -- | -- | -- | -- | -0.45 | -- | -- | -- | -- | -- |
| 242.67 | 0.729 | 3.86 | -- | 1.58 | -- | -- | -- | -0.556 | 6.32 | -- | -- | -- | -- |
| 161.87 | 0.593 | 3.82 | -- | -- | 2.83 | -- | -- | -0.186 | -- | 89.68 | 169 | 22.2 | -- |
| 372.53 | 0.901 | 3.89 | -- | -- | -- | -- | -- | -0.527 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 124.46 | humidity | 90 | 90 | > th | dose independent | rect. | 3 | 6 |
| 6 | 127.91 | humidity | 90 | 270 | > th | dose dependent | rect. | 1 | 5 |
| 8 | 128.79 | humidity | 90 | 90 | > th | dose dependent | rect. | 3 | 6 |
| 9 | 129.18 | humidity | 90 | 90 | > th | dose dependent | rect. | 3 | 8 |
| 28 | 132.52 | humidity | 90 | 270 | > th | dose dependent | rect. | 3 | 2 |
| 48 | 135.89 | humidity | 90 | 90 | > th | dose dependent | sin | 3 | NA |
| 88 | 138.98 | wind | 3 | 90 | < th | dose dependent | rect. | 2 | 7 |
| 135 | 140.98 | humidity | 80 | 10 | > th | dose dependent | rect. | 2 | 6 |
| 143 | 141.19 | humidity | 90 | 90 | > th | dose independent | sin | 4 | NA |
| 291 | 145.75 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 349 | 147.26 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 2 | 3 |
| 454 | 149.66 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 5 |
| 459 | 149.84 | wind | 1 | 90 | < th | dose independent | rect. | 2 | 7 |
| 469 | 150.11 | wind | 1 | 90 | < th | dose independent | rect. | 2 | 5 |
| 521 | 151.16 | humidity | 90 | 90 | < th | dose independent | sin | 4 | NA |
| 575 | 152.22 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 4 |
| 594 | 152.56 | wind | 1 | 90 | > th | dose independent | rect. | 23 | 14 |
| 597 | 152.71 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 5 |
| 612 | 153.06 | temperature | 15 | 270 | > th | dose dependent | rect. | 2 | 3 |
| 616 | 153.17 | humidity | 90 | 10 | < th | dose independent | sin | 3 | NA |
| 639 | 153.59 | wind | 1 | 270 | < th | dose independent | rect. | 4 | 2 |
| 653 | 153.84 | radiation | 1 | 270 | < th | dose dependent | rect. | 1 | 13 |
| 668 | 154.06 | radiation | 1 | 270 | < th | dose dependent | rect. | 1 | 9 |
| 686 | 154.22 | radiation | 1 | 270 | < th | dose independent | rect. | 1 | 13 |
| 703 | 154.31 | atmosphere | 1010 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 707 | 154.36 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 3 |
| 714 | 154.44 | radiation | 1 | 270 | < th | dose independent | rect. | 1 | 9 |
| 718 | 154.46 | temperature | 25 | 90 | < th | dose independent | rect. | 4 | 1 |
| 805 | 155.67 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 1 | 5 |
| 813 | 155.82 | temperature | 10 | 270 | > th | dose independent | rect. | 1 | 5 |
| 815 | 155.82 | temperature | 30 | 270 | < th | dose independent | rect. | 1 | 5 |
| 816 | 155.82 | humidity | 50 | 270 | > th | dose independent | rect. | 1 | 5 |
| 819 | 155.82 | atmosphere | 995 | 270 | > th | dose independent | rect. | 1 | 5 |
| 821 | 155.82 | radiation | 20 | 270 | < th | dose independent | rect. | 1 | 5 |
| 824 | 155.82 | temperature | 10 | 270 | > th | dose independent | rect. | 6 | 19 |
| 825 | 155.83 | wind | 9 | 270 | < th | dose independent | rect. | 1 | 5 |
| 833 | 155.96 | radiation | 40 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 853 | 156.16 | temperature | 15 | 30 | > th | dose dependent | rect. | 2 | 4 |
| 871 | 156.46 | humidity | 90 | 90 | < th | dose independent | rect. | 23 | 14 |
| 895 | 156.70 | wind | 9 | 270 | < th | dose independent | rect. | 6 | 19 |
| 917 | 157.01 | wind | 1 | 270 | > th | dose independent | rect. | 4 | 21 |
| 984 | 157.65 | wind | 1 | 270 | > th | dose independent | rect. | 4 | 9 |