FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0156100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.44 (0.0652) R2 : 0.434
β1 : -2.98 (0.431) R2dD : 0.411 R2D : -0.238
β2 : 0.83 (0.109) R2dC : 0.0683 R2C : 0.0442
β3 : -0.582 (0.168) R2dE : 0.027 R2E : 0.0576
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -9.47 (1.18) R2dD*E : 0.543 R2D*E : -0.161
γ1 : 0.408 (0.151) R2dN8 : 0.0327 R2N8 : 0.0699
σ : 0.851
deviance : 334.04
__
_____
C
peak time of C : 1.08
E
wheather : temperature
threshold : 22.61
memory length : 5918
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 4.73
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
334.99 0.86 5.42 -2.79 0.774 -0.718 -0.241 -8.97 0.495 1.22 21.97 5610 4.99 --
383.64 0.912 5.17 0.207 0.947 -1.16 -0.279 -- 0.957 1.36 28.13 1431 2.04 --
334.04 0.851 5.44 -2.98 0.83 -0.582 -- -9.47 0.408 1.08 22.61 5918 4.73 --
375.46 0.902 5.17 0.0952 0.782 -1.59 -- -- 0.924 0.873 28.07 1506 1.04 --
371.66 0.898 5.42 -2.84 -- -0.599 -- -9.51 0.466 -- 22.4 5522 4.64 --
472.51 1.02 5.15 -0.359 0.674 -- -0.343 -- 0.986 1 -- -- -- --
472.93 1.02 5.15 -0.346 0.674 -- -- -- 0.989 0.793 -- -- -- --
401.02 0.933 5.14 0.22 -- -1.78 -- -- 0.979 -- 27.18 4848 1.2 --
369.79 0.896 5.18 -- 0.778 -1.66 -- -- 0.948 0.117 27.62 5224 1.01 --
501.28 1.05 5.13 -0.321 -- -- -- -- 1 -- -- -- -- --
476.08 1.02 5.14 -- 0.668 -- -- -- 1.03 0.77 -- -- -- --
401.56 0.933 5.14 -- -- -1.73 -- -- 0.965 -- 27.2 4855 1.75 --
504 1.05 5.13 -- -- -- -- -- 1.04 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 320.71 wind 1.0 14400 < th dose dependent rect. 10 2
2 322.76 radiation 40.0 14400 > th dose dependent rect. 12 2
4 323.34 radiation 40.0 14400 > th dose dependent rect. 12 21
5 323.36 radiation 40.0 14400 > th dose dependent rect. 12 4
23 323.69 wind 1.0 14400 < th dose independent rect. 10 2
26 326.15 radiation 10.0 14400 > th dose independent rect. 16 15
27 326.22 radiation 10.0 14400 < th dose dependent rect. 5 1
31 326.47 radiation 10.0 14400 < th dose independent rect. 16 15
32 326.53 radiation 40.0 14400 > th dose dependent sin 14 NA
33 326.87 precipitation 0.1 43200 > th dose dependent rect. 20 6
52 327.48 radiation 40.0 14400 < th dose dependent rect. 3 3
58 327.60 radiation 40.0 14400 < th dose dependent rect. 17 14
67 327.73 radiation 1.0 14400 > th dose dependent rect. 17 14
76 328.16 radiation 10.0 14400 < th dose dependent rect. 20 10
82 328.34 radiation 10.0 14400 < th dose dependent rect. 22 8
90 328.59 radiation 40.0 14400 < th dose independent rect. 12 21
93 328.67 radiation 40.0 14400 < th dose independent rect. 12 11
94 328.68 radiation 40.0 14400 < th dose independent rect. 12 9
97 328.69 radiation 40.0 14400 < th dose independent rect. 12 7
99 328.69 radiation 40.0 14400 < th dose independent rect. 12 19
103 328.70 radiation 40.0 14400 < th dose independent rect. 12 16
106 328.71 radiation 40.0 14400 < th dose independent rect. 12 5
138 329.20 radiation 1.0 14400 > th dose dependent rect. 5 1
141 329.24 radiation 40.0 14400 < th dose independent sin 14 NA
159 329.28 radiation 10.0 14400 < th dose independent rect. 16 2
161 329.29 radiation 40.0 14400 > th dose independent rect. 12 21
164 329.31 radiation 40.0 14400 > th dose independent rect. 12 4
218 329.62 radiation 10.0 14400 < th dose independent rect. 16 5
227 329.68 radiation 10.0 14400 < th dose independent rect. 16 12
233 329.81 wind 1.0 14400 > th dose independent rect. 10 2
234 329.95 precipitation 0.1 43200 > th dose independent rect. 17 9
235 329.97 precipitation 0.1 43200 < th dose independent rect. 17 9
236 329.97 precipitation 0.1 43200 < th dose dependent rect. 17 9
247 330.40 radiation 40.0 14400 > th dose independent sin 14 NA
280 330.57 precipitation 0.1 43200 > th dose independent rect. 20 6
281 330.58 precipitation 0.1 43200 < th dose independent rect. 20 6
283 330.58 precipitation 0.1 43200 < th dose dependent rect. 20 6
295 330.70 radiation 10.0 14400 < th dose dependent sin 11 NA
350 331.35 radiation 10.0 14400 < th dose dependent rect. 15 19
390 332.00 precipitation 0.1 43200 < th dose independent rect. 10 16
391 332.00 precipitation 0.1 43200 < th dose dependent rect. 10 16
394 332.02 precipitation 0.1 43200 > th dose independent rect. 10 16
408 332.32 precipitation 0.1 43200 < th dose independent rect. 8 18
409 332.32 precipitation 0.1 43200 < th dose dependent rect. 8 18
415 332.38 precipitation 0.1 43200 > th dose independent rect. 8 18
420 332.48 radiation 10.0 14400 < th dose independent sin 12 NA
426 332.54 wind 5.0 43200 < th dose independent rect. 7 1
433 332.63 precipitation 0.1 43200 > th dose independent rect. 14 12
441 332.71 radiation 10.0 14400 > th dose independent rect. 16 2
486 332.80 wind 1.0 43200 > th dose independent rect. 21 3
539 333.14 wind 5.0 43200 > th dose independent rect. 7 1
554 333.18 wind 5.0 43200 > th dose independent rect. 6 3
555 333.19 precipitation 0.1 43200 > th dose dependent rect. 21 2
593 333.42 radiation 30.0 14400 < th dose dependent rect. 15 2
633 333.69 wind 1.0 43200 > th dose independent rect. 23 1
647 333.72 wind 5.0 43200 < th dose independent rect. 6 3
655 333.77 wind 5.0 43200 > th dose independent rect. 4 5
685 333.86 radiation 1.0 14400 > th dose dependent sin 13 NA
688 333.87 radiation 1.0 14400 > th dose dependent rect. 15 2
694 333.91 radiation 30.0 14400 < th dose dependent rect. 15 6
702 333.93 precipitation 0.1 43200 > th dose independent sin 17 NA
727 333.98 precipitation 0.1 43200 < th dose independent sin 17 NA
728 333.98 precipitation 0.1 43200 < th dose dependent sin 17 NA
752 334.11 radiation 1.0 14400 > th dose dependent rect. 15 4
792 334.18 precipitation 0.1 43200 > th dose dependent rect. 10 17
813 334.29 precipitation 0.1 43200 < th dose independent rect. 21 1
814 334.29 precipitation 0.1 43200 < th dose dependent rect. 21 1
824 334.32 precipitation 0.1 43200 > th dose independent rect. 21 1
948 334.91 precipitation 0.1 43200 > th dose dependent rect. 20 23
966 334.99 wind 5.0 43200 < th dose independent rect. 4 5
974 335.01 radiation 10.0 14400 > th dose independent sin 12 NA
992 335.05 radiation 40.0 14400 > th dose dependent rect. 15 23
996 335.07 radiation 40.0 14400 > th dose dependent rect. 8 6