Os11g0153600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : GTP-binding signal recognition particle SRP54, G-domain containing protein.
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Os11g0153600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : GTP-binding signal recognition particle SRP54, G-domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70.38 | 0.394 | 12.9 | 0.424 | 1.37 | 0.811 | -0.619 | -1.93 | -0.134 | 21.2 | 25.13 | 208 | -- | -- |
| 71.55 | 0.394 | 12.9 | 0.65 | 1.4 | 0.632 | -0.648 | -- | -0.0674 | 21.1 | 25.2 | 161 | -- | -- |
| 71.73 | 0.394 | 12.9 | 0.441 | 1.37 | 0.813 | -- | -1.97 | -0.136 | 21.2 | 25.12 | 206 | -- | -- |
| 72.91 | 0.398 | 12.9 | 0.679 | 1.41 | 0.627 | -- | -- | -0.0685 | 21.1 | 25.3 | 146 | -- | -- |
| 140.53 | 0.552 | 12.9 | 0.0916 | -- | 1.67 | -- | -2.49 | -0.3 | -- | 24.5 | 627 | -- | -- |
| 78.05 | 0.414 | 12.9 | 0.765 | 1.5 | -- | -0.648 | -- | -0.0277 | 20.4 | -- | -- | -- | -- |
| 79.38 | 0.417 | 12.9 | 0.785 | 1.5 | -- | -- | -- | -0.0281 | 20.5 | -- | -- | -- | -- |
| 146.5 | 0.564 | 12.9 | 0.495 | -- | 1.44 | -- | -- | -0.174 | -- | 24.36 | 632 | -- | -- |
| 80.05 | 0.417 | 12.9 | -- | 1.49 | 0.593 | -- | -- | -0.322 | 20.4 | 18.49 | 47520 | -- | -- |
| 204.79 | 0.669 | 12.8 | 0.778 | -- | -- | -- | -- | -0.043 | -- | -- | -- | -- | -- |
| 95.61 | 0.457 | 12.9 | -- | 1.5 | -- | -- | -- | -0.116 | 20.5 | -- | -- | -- | -- |
| 152.56 | 0.575 | 12.9 | -- | -- | 1.52 | -- | -- | -0.237 | -- | 24.3 | 641 | -- | -- |
| 220.74 | 0.693 | 12.8 | -- | -- | -- | -- | -- | -0.129 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.19 | radiation | 10 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 4 | 66.11 | radiation | 1 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 6 | 66.51 | radiation | 1 | 4320 | < th | dose independent | rect. | 4 | 1 |
| 8 | 66.73 | radiation | 20 | 14400 | < th | dose independent | rect. | 17 | 13 |
| 9 | 66.81 | radiation | 1 | 14400 | < th | dose independent | rect. | 8 | 2 |
| 10 | 66.82 | radiation | 20 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 12 | 66.95 | humidity | 80 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 13 | 66.95 | humidity | 80 | 43200 | > th | dose dependent | rect. | 21 | 6 |
| 16 | 67.01 | temperature | 15 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 18 | 67.03 | wind | 7 | 30 | < th | dose independent | rect. | 9 | 23 |
| 20 | 67.04 | radiation | 1 | 14400 | > th | dose independent | rect. | 8 | 2 |
| 26 | 67.09 | radiation | 20 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 31 | 67.12 | temperature | 20 | 90 | > th | dose independent | sin | 6 | NA |
| 40 | 67.17 | temperature | 25 | 270 | > th | dose independent | rect. | 9 | 9 |
| 42 | 67.18 | temperature | 25 | 720 | > th | dose independent | rect. | 9 | 2 |
| 43 | 67.19 | humidity | 90 | 43200 | < th | dose independent | rect. | 24 | 4 |
| 46 | 67.23 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 14 |
| 51 | 67.26 | humidity | 90 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 52 | 67.27 | temperature | 15 | 14400 | > th | dose independent | rect. | 9 | 3 |
| 60 | 67.33 | temperature | 15 | 14400 | < th | dose independent | rect. | 9 | 3 |
| 61 | 67.33 | humidity | 90 | 43200 | < th | dose independent | rect. | 23 | 6 |
| 66 | 67.34 | humidity | 60 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 71 | 67.39 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 4 |
| 74 | 67.39 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 4 |
| 76 | 67.40 | wind | 1 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 79 | 67.42 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 3 |
| 82 | 67.44 | wind | 1 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 92 | 67.47 | humidity | 90 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 95 | 67.49 | temperature | 15 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 98 | 67.50 | wind | 1 | 43200 | > th | dose independent | rect. | 15 | 2 |
| 105 | 67.51 | radiation | 10 | 43200 | < th | dose dependent | rect. | 18 | 12 |
| 116 | 67.55 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 5 |
| 132 | 67.59 | wind | 1 | 43200 | > th | dose independent | rect. | 13 | 5 |
| 134 | 67.60 | radiation | 1 | 4320 | > th | dose independent | rect. | 4 | 1 |
| 145 | 67.60 | radiation | 1 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 167 | 67.63 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 200 | 67.69 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 18 |
| 204 | 67.70 | humidity | 90 | 14400 | < th | dose independent | rect. | 9 | 15 |
| 215 | 67.72 | radiation | 20 | 14400 | < th | dose independent | rect. | 3 | 4 |
| 227 | 67.73 | temperature | 15 | 14400 | < th | dose dependent | sin | 9 | NA |
| 249 | 67.76 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 287 | 67.81 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 306 | 67.83 | temperature | 15 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 357 | 67.87 | humidity | 70 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 369 | 67.87 | radiation | 20 | 43200 | < th | dose independent | rect. | 19 | 12 |
| 384 | 67.88 | radiation | 20 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 386 | 67.88 | wind | 1 | 43200 | < th | dose independent | rect. | 13 | 5 |
| 419 | 67.91 | wind | 9 | 14400 | < th | dose independent | rect. | 20 | 15 |
| 420 | 67.91 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 18 |
| 438 | 67.93 | humidity | 70 | 14400 | < th | dose dependent | rect. | 20 | 2 |
| 451 | 67.94 | temperature | 15 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 455 | 67.94 | humidity | 50 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 458 | 67.94 | radiation | 1 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 468 | 67.95 | temperature | 15 | 14400 | < th | dose independent | rect. | 21 | 4 |
| 472 | 67.95 | wind | 5 | 14400 | < th | dose independent | rect. | 1 | 9 |
| 481 | 67.96 | humidity | 90 | 14400 | > th | dose independent | rect. | 8 | 17 |
| 490 | 67.97 | humidity | 90 | 14400 | < th | dose independent | sin | 20 | NA |
| 491 | 67.97 | temperature | 15 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 493 | 67.97 | humidity | 90 | 14400 | < th | dose independent | rect. | 20 | 3 |
| 526 | 67.99 | humidity | 60 | 14400 | > th | dose independent | rect. | 3 | 4 |
| 537 | 68.00 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 552 | 68.01 | temperature | 15 | 43200 | > th | dose independent | rect. | 22 | 2 |
| 563 | 68.01 | wind | 5 | 14400 | > th | dose independent | rect. | 1 | 9 |
| 600 | 68.03 | humidity | 90 | 14400 | < th | dose independent | rect. | 15 | 9 |
| 645 | 68.06 | temperature | 20 | 90 | < th | dose independent | sin | 6 | NA |
| 654 | 68.06 | wind | 9 | 14400 | > th | dose independent | rect. | 19 | 16 |
| 665 | 68.07 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 674 | 68.07 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 2 |
| 682 | 68.08 | humidity | 60 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 691 | 68.08 | wind | 5 | 14400 | > th | dose dependent | rect. | 6 | 3 |
| 692 | 68.08 | radiation | 10 | 4320 | < th | dose dependent | rect. | 19 | 10 |
| 712 | 68.09 | wind | 5 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 719 | 68.10 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 5 |
| 724 | 68.10 | temperature | 15 | 14400 | < th | dose dependent | no | NA | NA |
| 725 | 68.10 | humidity | 50 | 14400 | < th | dose dependent | rect. | 8 | 2 |
| 747 | 68.11 | humidity | 90 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 765 | 68.11 | humidity | 80 | 14400 | > th | dose dependent | rect. | 6 | 4 |
| 769 | 68.11 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 17 |
| 772 | 68.12 | humidity | 90 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 779 | 68.12 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 8 |
| 782 | 68.12 | humidity | 70 | 14400 | > th | dose independent | rect. | 20 | 10 |
| 786 | 68.12 | wind | 9 | 14400 | < th | dose independent | rect. | 20 | 12 |
| 813 | 68.14 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 14 |
| 821 | 68.15 | humidity | 70 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 836 | 68.16 | radiation | 20 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 857 | 68.16 | radiation | 20 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 872 | 68.16 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 15 |
| 883 | 68.17 | humidity | 90 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 890 | 68.18 | humidity | 60 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 903 | 68.18 | temperature | 15 | 14400 | < th | dose dependent | rect. | 1 | 23 |
| 920 | 68.20 | wind | 1 | 43200 | < th | dose independent | rect. | 6 | 13 |
| 929 | 68.20 | temperature | 15 | 14400 | < th | dose dependent | rect. | 3 | 23 |
| 941 | 68.21 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 10 |
| 962 | 68.23 | temperature | 25 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 991 | 68.25 | wind | 9 | 14400 | > th | dose independent | rect. | 20 | 12 |