Os11g0152700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transcription factor HBP-1b(C38) (Fragment).
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Os11g0152700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transcription factor HBP-1b(C38) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 147.64 | 0.571 | 5.55 | -1.89 | 1.19 | 1.29 | -1.16 | -1.21 | 0.493 | 5.13 | 19.7 | 886 | -- | -- |
| 151.18 | 0.573 | 5.52 | -1.72 | 1.19 | 1.47 | -1.19 | -- | 0.533 | 5.11 | 19.73 | 888 | -- | -- |
| 150.99 | 0.572 | 5.54 | -1.91 | 1.18 | 1.29 | -- | -1.24 | 0.495 | 5.08 | 19.7 | 898 | -- | -- |
| 154.68 | 0.579 | 5.52 | -1.7 | 1.17 | 1.42 | -- | -- | 0.532 | 5.07 | 20.01 | 934 | -- | -- |
| 219.6 | 0.69 | 5.57 | -1.96 | -- | 1.34 | -- | -1.45 | 0.477 | -- | 20.07 | 1075 | -- | -- |
| 198.87 | 0.661 | 5.46 | -1.17 | 1.21 | -- | -1.3 | -- | 0.808 | 4.52 | -- | -- | -- | -- |
| 203.37 | 0.668 | 5.45 | -1.16 | 1.21 | -- | -- | -- | 0.815 | 4.49 | -- | -- | -- | -- |
| 224.45 | 0.698 | 5.54 | -1.73 | -- | 1.55 | -- | -- | 0.522 | -- | 20 | 1077 | -- | -- |
| 219.61 | 0.69 | 5.45 | -- | 1.2 | 0.759 | -- | -- | 0.801 | 4.88 | 20.65 | 751 | -- | -- |
| 281.01 | 0.783 | 5.46 | -1.11 | -- | -- | -- | -- | 0.847 | -- | -- | -- | -- | -- |
| 238.63 | 0.723 | 5.42 | -- | 1.18 | -- | -- | -- | 0.944 | 4.51 | -- | -- | -- | -- |
| 290.6 | 0.794 | 5.47 | -- | -- | 0.872 | -- | -- | 0.821 | -- | 20.22 | 986 | -- | -- |
| 313.49 | 0.826 | 5.43 | -- | -- | -- | -- | -- | 0.97 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 136.37 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 19 |
| 3 | 136.49 | humidity | 90 | 14400 | > th | dose dependent | rect. | 1 | 20 |
| 36 | 137.28 | humidity | 90 | 14400 | > th | dose dependent | rect. | 14 | 14 |
| 55 | 137.56 | humidity | 90 | 14400 | > th | dose dependent | sin | 14 | NA |
| 57 | 137.57 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 59 | 137.57 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 23 |
| 60 | 137.58 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 23 |
| 85 | 137.79 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 23 |
| 87 | 137.82 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 20 |
| 178 | 139.73 | humidity | 90 | 14400 | > th | dose dependent | sin | 4 | NA |
| 187 | 140.12 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 8 |
| 199 | 140.30 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 11 |
| 281 | 143.00 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 3 |
| 292 | 143.43 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 9 |
| 317 | 144.28 | radiation | 1 | 4320 | < th | dose dependent | rect. | 6 | 11 |
| 335 | 144.93 | radiation | 1 | 4320 | > th | dose independent | rect. | 6 | 10 |
| 336 | 144.97 | radiation | 1 | 4320 | < th | dose independent | rect. | 6 | 10 |
| 340 | 145.17 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 16 |
| 348 | 145.37 | radiation | 1 | 4320 | < th | dose dependent | rect. | 6 | 5 |
| 377 | 145.90 | humidity | 90 | 14400 | > th | dose independent | rect. | 1 | 20 |
| 382 | 145.94 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 4 |
| 406 | 146.22 | radiation | 1 | 4320 | > th | dose independent | rect. | 6 | 5 |
| 418 | 146.32 | humidity | 90 | 14400 | > th | dose independent | sin | 5 | NA |
| 421 | 146.34 | radiation | 1 | 4320 | < th | dose independent | rect. | 6 | 5 |
| 427 | 146.38 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 22 |
| 428 | 146.39 | wind | 9 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 436 | 146.46 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 452 | 146.57 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 23 |
| 471 | 146.72 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 5 |
| 476 | 146.77 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 19 |
| 486 | 146.83 | wind | 1 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 492 | 146.86 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |
| 512 | 147.03 | humidity | 90 | 14400 | > th | dose independent | rect. | 9 | 23 |
| 549 | 147.31 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 4 |
| 550 | 147.31 | wind | 9 | 43200 | < th | dose dependent | rect. | 1 | 5 |
| 559 | 147.39 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 6 |
| 626 | 147.97 | humidity | 90 | 14400 | > th | dose independent | rect. | 15 | 14 |
| 639 | 148.04 | humidity | 90 | 14400 | > th | dose independent | rect. | 12 | 17 |
| 646 | 148.10 | humidity | 90 | 14400 | > th | dose independent | sin | 14 | NA |
| 652 | 148.12 | humidity | 90 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 653 | 148.12 | humidity | 90 | 14400 | > th | dose independent | rect. | 17 | 11 |
| 666 | 148.20 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 9 |
| 675 | 148.24 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 5 |
| 797 | 148.78 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 2 |
| 806 | 148.81 | temperature | 20 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 808 | 148.82 | temperature | 25 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 818 | 148.86 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 904 | 149.37 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 4 |
| 908 | 149.38 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 20 |
| 936 | 149.49 | temperature | 20 | 14400 | > th | dose dependent | rect. | 11 | 4 |
| 942 | 149.51 | humidity | 80 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 945 | 149.52 | humidity | 90 | 14400 | < th | dose independent | rect. | 3 | 12 |
| 954 | 149.55 | humidity | 80 | 14400 | > th | dose dependent | rect. | 14 | 1 |