Os11g0152600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os11g0152600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66.69 | 0.384 | 5.19 | 0.793 | 0.592 | -1.14 | -0.351 | -1.38 | 0.357 | 1.61 | 22.5 | 1534 | -- | -- |
| 72.78 | 0.397 | 5.19 | 0.468 | 0.626 | -1.08 | -0.422 | -- | 0.31 | 1.55 | 22.66 | 1529 | -- | -- |
| 67.08 | 0.381 | 5.19 | 0.8 | 0.605 | -1.14 | -- | -1.39 | 0.362 | 1.57 | 22.49 | 1587 | -- | -- |
| 72.1 | 0.395 | 5.23 | 0.42 | 0.611 | -1.09 | -- | -- | 0.284 | 1.76 | 22.4 | 1537 | -- | -- |
| 85.85 | 0.432 | 5.2 | 0.731 | -- | -1.18 | -- | -1.11 | 0.342 | -- | 22.3 | 1206 | -- | -- |
| 123.89 | 0.522 | 5.15 | 0.725 | 0.624 | -- | -0.366 | -- | 0.64 | 1.75 | -- | -- | -- | -- |
| 124.42 | 0.522 | 5.15 | 0.737 | 0.624 | -- | -- | -- | 0.643 | 1.71 | -- | -- | -- | -- |
| 86.23 | 0.432 | 5.22 | 0.263 | -- | -1.28 | -- | -- | 0.265 | -- | 24.2 | 2414 | -- | -- |
| 74.26 | 0.401 | 5.25 | -- | 0.604 | -1.2 | -- | -- | 0.175 | 1.66 | 22.6 | 1648 | -- | -- |
| 148.08 | 0.569 | 5.14 | 0.762 | -- | -- | -- | -- | 0.657 | -- | -- | -- | -- | -- |
| 138.73 | 0.551 | 5.17 | -- | 0.637 | -- | -- | -- | 0.561 | 1.75 | -- | -- | -- | -- |
| 87.4 | 0.435 | 5.23 | -- | -- | -1.35 | -- | -- | 0.19 | -- | 24.2 | 2360 | -- | -- |
| 163.41 | 0.597 | 5.16 | -- | -- | -- | -- | -- | 0.572 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 68.78 | temperature | 30 | 1440 | < th | dose dependent | rect. | 14 | 13 |
| 2 | 68.80 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 11 |
| 4 | 68.81 | temperature | 30 | 1440 | < th | dose dependent | sin | 15 | NA |
| 26 | 69.09 | temperature | 10 | 1440 | > th | dose dependent | rect. | 14 | 16 |
| 27 | 69.10 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 12 |
| 29 | 69.11 | temperature | 10 | 1440 | > th | dose dependent | sin | 14 | NA |
| 109 | 69.45 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 2 |
| 217 | 69.80 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 9 |
| 223 | 69.82 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 2 |
| 520 | 70.50 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 545 | 70.54 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 564 | 70.58 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 571 | 70.59 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 586 | 70.62 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 769 | 70.93 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 809 | 70.99 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 864 | 71.06 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 23 |
| 889 | 71.10 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 911 | 71.13 | temperature | 25 | 1440 | > th | dose independent | rect. | 13 | 10 |