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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0152400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, uncharacterized transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.69 (0.0383) R2 : 0.238
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.807 (0.0962) R2dC : 0.118 R2C : 0.0796
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.688 (0.0805) R2dN8 : 0.158 R2N8 : 0.119
σ : 0.722
deviance : 237.9
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_____
C
peak time of C : 20.6
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
214.28 0.688 3.76 -0.0615 3.86 4.03 4.24 4.13 0.75 18.3 0.423 725 -- --
217.16 0.686 3.74 0.0269 3.3 3.35 0.878 -- 0.772 18.4 0.4986 732 -- --
227.4 0.702 3.76 0.165 4.44 4.95 -- 0.186 0.831 18.6 0.5 775 -- --
219.25 0.69 3.72 -0.0559 3.08 3.06 -- -- 0.778 18.5 0.4593 730 -- --
243.74 0.731 3.67 -0.309 -- 0.507 -- 0.0596 0.65 -- 0.5 775 -- --
234.07 0.717 3.7 -0.304 0.808 -- 0.575 -- 0.653 20.6 -- -- -- --
235.15 0.718 3.7 -0.323 0.806 -- -- -- 0.652 20.7 -- -- -- --
243.59 0.727 3.62 0.196 -- 1.79 -- -- 0.899 -- 0.49 1531 -- --
219.25 0.69 3.71 -- 3.01 2.98 -- -- 0.775 18.5 0.46 730 -- --
271.83 0.77 3.68 -0.325 -- -- -- -- 0.646 -- -- -- -- --
237.9 0.722 3.69 -- 0.807 -- -- -- 0.688 20.6 -- -- -- --
242.72 0.726 3.63 -- -- 1.61 -- -- 0.825 -- 0.49 1541 -- --
274.61 0.773 3.67 -- -- -- -- -- 0.682 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 207.35 radiation 10 4320 < th dose dependent rect. 7 1
2 208.22 radiation 40 4320 < th dose dependent rect. 8 1
3 208.36 radiation 10 4320 < th dose dependent rect. 6 3
4 208.84 radiation 1 4320 > th dose dependent rect. 8 1
5 208.94 radiation 10 4320 < th dose dependent rect. 18 15
8 209.15 radiation 10 4320 < th dose dependent rect. 24 9
9 209.15 radiation 10 4320 < th dose dependent rect. 20 13
18 209.17 radiation 10 4320 < th dose dependent rect. 2 7
32 209.33 humidity 90 14400 < th dose dependent rect. 2 2
39 209.96 atmosphere 1005 43200 > th dose independent rect. 11 1
40 210.05 atmosphere 1005 43200 < th dose independent rect. 11 1
42 210.19 radiation 10 4320 < th dose independent rect. 7 3
52 210.70 atmosphere 1005 43200 < th dose independent rect. 22 2
64 210.78 radiation 10 4320 < th dose independent rect. 17 17
67 210.82 atmosphere 1005 43200 < th dose independent rect. 21 7
68 210.87 radiation 40 4320 < th dose dependent rect. 18 16
77 210.94 radiation 40 4320 < th dose dependent rect. 24 10
86 210.95 radiation 40 4320 < th dose dependent rect. 20 14
128 211.19 radiation 10 4320 < th dose dependent sin 9 NA
131 211.20 atmosphere 1005 43200 < th dose independent rect. 18 6
137 211.21 atmosphere 1005 43200 > th dose independent rect. 2 2
153 211.29 radiation 1 14400 < th dose dependent rect. 24 5
156 211.31 radiation 1 14400 < th dose dependent rect. 3 2
158 211.32 radiation 1 4320 > th dose dependent rect. 18 16
165 211.36 radiation 10 4320 < th dose independent rect. 24 10
167 211.36 radiation 10 4320 < th dose independent rect. 20 14
184 211.41 radiation 1 4320 > th dose dependent rect. 4 6
219 211.58 atmosphere 1005 43200 < th dose independent rect. 1 2
252 211.68 radiation 1 14400 < th dose dependent rect. 21 8
314 212.01 atmosphere 1005 43200 > th dose independent rect. 18 11
315 212.02 atmosphere 1005 43200 < th dose independent sin 13 NA
348 212.19 atmosphere 1005 43200 < th dose independent rect. 10 19
359 212.24 radiation 1 720 < th dose dependent rect. 22 21
403 212.41 atmosphere 1005 43200 < th dose independent rect. 18 20
456 212.55 atmosphere 1005 43200 < th dose independent rect. 20 21
466 212.57 wind 7 14400 > th dose dependent rect. 10 4
504 212.66 atmosphere 1005 43200 > th dose independent rect. 18 5
517 212.69 atmosphere 1005 43200 > th dose independent sin 12 NA
518 212.69 atmosphere 1005 43200 < th dose independent no NA NA
535 212.72 atmosphere 1005 43200 < th dose independent rect. 13 23
540 212.73 atmosphere 1005 43200 < th dose independent rect. 1 23
542 212.74 atmosphere 1005 43200 > th dose independent rect. 10 19
574 212.79 atmosphere 1005 43200 > th dose independent rect. 18 20
609 212.85 radiation 30 4320 < th dose independent rect. 8 1
619 212.86 atmosphere 1005 43200 > th dose independent rect. 16 22
632 212.89 humidity 80 14400 > th dose independent rect. 2 2
694 213.00 atmosphere 1005 43200 > th dose independent rect. 21 17
712 213.02 atmosphere 1005 43200 > th dose independent rect. 21 20
750 213.09 atmosphere 1005 43200 > th dose independent rect. 24 14
771 213.12 atmosphere 1005 43200 > th dose independent no NA NA
783 213.13 wind 7 14400 < th dose independent rect. 11 3
809 213.15 atmosphere 1005 43200 > th dose independent rect. 24 23
840 213.20 wind 7 14400 > th dose independent rect. 10 4
847 213.20 atmosphere 1010 43200 < th dose dependent rect. 9 1
869 213.24 radiation 1 14400 < th dose independent rect. 18 8
891 213.27 radiation 1 14400 < th dose independent rect. 18 2
904 213.29 radiation 1 14400 > th dose independent rect. 18 1
924 213.30 radiation 40 43200 > th dose independent rect. 10 1