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Os11g0148500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Pyruvate kinase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.2 (0.0124) R2 : 0.656
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.907 (0.0308) R2dC : 0.66 R2C : 0.656
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00861 (0.026) R2dN8 : 0.000107 R2N8 : -0.00426
σ : 0.233
deviance : 24.83
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_____
C
peak time of C : 9.04
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
16.48 0.191 13.3 -0.586 0.893 -0.337 0.219 0.841 -0.147 8.99 6.509 1446 -- --
17.48 0.195 13.2 -0.491 0.885 -0.347 0.2 -- -0.114 8.84 6.356 1487 -- --
16.61 0.19 13.3 -0.581 0.913 -0.328 -- 0.868 -0.142 9.03 6.518 1419 -- --
17.57 0.195 13.2 -0.473 0.864 -0.362 -- -- -0.122 8.81 6.341 1506 -- --
37.5 0.287 13.3 -0.425 -- -0.542 -- -0.0315 -0.0653 -- 6.518 1419 -- --
19.71 0.208 13.2 -0.443 0.908 -- 0.145 -- -0.0575 9.01 -- -- -- --
19.78 0.208 13.2 -0.438 0.908 -- -- -- -0.0574 9.01 -- -- -- --
37.41 0.285 13.3 -0.683 -- 0.971 -- -- -0.164 -- 1.834 1024 -- --
22.91 0.223 13.2 -- 0.897 -0.294 -- -- -0.0833 9.02 10 4388 -- --
67.11 0.383 13.3 -0.439 -- -- -- -- -0.0517 -- -- -- -- --
24.83 0.233 13.2 -- 0.907 -- -- -- -0.00861 9.04 -- -- -- --
32.55 0.266 13.2 -- -- 1.34 -- -- 0.0549 -- 0.17 1045 -- --
72.2 0.397 13.2 -- -- -- -- -- -0.00301 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 16.23 temperature 20 90 > th dose independent rect. 19 21
7 16.35 temperature 15 270 > th dose dependent rect. 19 14
8 16.36 radiation 10 43200 < th dose dependent rect. 20 8
10 16.40 humidity 50 1440 > th dose dependent rect. 9 4
13 16.43 humidity 90 1440 < th dose dependent rect. 9 4
18 16.45 temperature 20 10 > th dose independent rect. 20 18
20 16.45 radiation 10 43200 < th dose dependent rect. 20 6
23 16.48 temperature 20 90 > th dose independent rect. 19 18
28 16.48 temperature 30 270 < th dose dependent rect. 22 9
34 16.54 temperature 20 10 > th dose independent rect. 20 16
38 16.54 temperature 15 90 > th dose dependent rect. 19 21
40 16.56 temperature 30 30 < th dose dependent sin 7 NA
63 16.62 temperature 10 10 > th dose dependent sin 7 NA
70 16.63 temperature 15 10 > th dose dependent rect. 20 20
71 16.63 radiation 10 1440 < th dose dependent rect. 9 22
105 16.69 temperature 15 720 > th dose dependent rect. 19 3
115 16.71 radiation 10 1440 < th dose dependent sin 22 NA
127 16.72 radiation 10 90 < th dose dependent rect. 5 14
128 16.72 radiation 10 1440 < th dose dependent rect. 13 18
145 16.74 temperature 25 10 < th dose dependent rect. 24 10
158 16.75 radiation 10 90 < th dose dependent rect. 7 12
161 16.75 temperature 15 90 > th dose dependent rect. 19 18
167 16.76 radiation 10 1440 < th dose dependent rect. 8 12
180 16.77 radiation 10 1440 < th dose dependent rect. 8 10
228 16.81 radiation 10 1440 < th dose dependent sin 14 NA
282 16.85 humidity 90 1440 < th dose dependent sin 3 NA
292 16.85 temperature 15 10 > th dose dependent rect. 20 18
297 16.86 radiation 10 90 < th dose independent rect. 7 12
309 16.86 radiation 10 1440 < th dose dependent rect. 2 18
368 16.88 humidity 80 1440 > th dose independent rect. 8 6
373 16.88 radiation 10 1440 < th dose dependent no NA NA
401 16.89 humidity 70 90 > th dose independent rect. 1 18
403 16.89 humidity 50 1440 > th dose dependent sin 2 NA
405 16.89 radiation 10 1440 < th dose dependent rect. 16 1
413 16.89 temperature 15 10 > th dose dependent rect. 20 16
417 16.90 humidity 70 1440 > th dose independent rect. 16 21
444 16.92 temperature 25 720 > th dose independent rect. 19 3
462 16.92 radiation 10 1440 < th dose dependent rect. 15 23
504 16.95 humidity 80 1440 < th dose independent rect. 8 6
532 16.96 radiation 30 90 < th dose dependent rect. 9 10
568 16.98 radiation 10 1440 > th dose independent rect. 13 23
587 16.99 radiation 10 1440 > th dose independent rect. 9 23
588 16.99 radiation 10 1440 > th dose independent rect. 15 23
603 16.99 humidity 50 90 > th dose dependent rect. 1 18
606 17.00 radiation 1 90 < th dose independent rect. 5 14
608 17.00 radiation 10 1440 > th dose independent rect. 15 21
623 17.00 radiation 20 90 < th dose dependent rect. 21 22
626 17.01 humidity 70 1440 < th dose independent rect. 16 21
630 17.01 humidity 70 10 > th dose dependent rect. 18 1
669 17.03 radiation 10 1440 > th dose independent rect. 10 2
693 17.04 humidity 80 1440 < th dose independent rect. 9 3
695 17.04 radiation 10 1440 > th dose independent rect. 6 11
713 17.04 temperature 15 90 > th dose dependent rect. 19 8
732 17.05 radiation 10 1440 < th dose dependent rect. 15 5
733 17.05 temperature 15 90 > th dose dependent rect. 19 6
778 17.06 temperature 10 270 > th dose dependent rect. 17 21
796 17.07 radiation 10 1440 < th dose dependent rect. 15 12
804 17.08 radiation 10 1440 > th dose independent no NA NA
808 17.08 humidity 70 1440 > th dose independent rect. 8 12
863 17.08 temperature 20 270 > th dose independent rect. 17 21
886 17.08 humidity 70 1440 > th dose independent rect. 19 23
959 17.10 humidity 70 1440 > th dose independent no NA NA
960 17.10 radiation 10 1440 > th dose independent sin 0 NA