Os11g0146500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SPla/RYanodine receptor SPRY domain containing protein.
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Os11g0146500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SPla/RYanodine receptor SPRY domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.4 | 0.241 | 10.4 | 1.02 | 0.595 | 0.472 | 0.0473 | 0.126 | 0.0859 | 13.1 | 20.23 | 2469 | -- | -- |
| 26.43 | 0.239 | 10.4 | 1 | 0.594 | 0.464 | 0.0286 | -- | 0.0813 | 13.1 | 20.3 | 2437 | -- | -- |
| 26.41 | 0.239 | 10.4 | 1.02 | 0.595 | 0.473 | -- | 0.114 | 0.0861 | 13.1 | 20.2 | 2452 | -- | -- |
| 26.43 | 0.239 | 10.4 | 1 | 0.595 | 0.456 | -- | -- | 0.0826 | 13.1 | 20.3 | 2450 | -- | -- |
| 44.87 | 0.314 | 10.4 | 1.08 | -- | 0.326 | -- | -0.216 | 0.113 | -- | 20.2 | 2452 | -- | -- |
| 30.75 | 0.26 | 10.4 | 1.23 | 0.56 | -- | 0.0758 | -- | 0.194 | 13.1 | -- | -- | -- | -- |
| 30.77 | 0.26 | 10.4 | 1.23 | 0.56 | -- | -- | -- | 0.195 | 13.1 | -- | -- | -- | -- |
| 44.85 | 0.313 | 10.4 | 1.12 | -- | 0.349 | -- | -- | 0.12 | -- | 20.19 | 3177 | -- | -- |
| 30.14 | 0.256 | 10.5 | -- | 0.574 | 1.02 | -- | -- | -0.18 | 13.1 | 18.29 | 47520 | -- | -- |
| 50.21 | 0.331 | 10.4 | 1.21 | -- | -- | -- | -- | 0.184 | -- | -- | -- | -- | -- |
| 70.59 | 0.393 | 10.4 | -- | 0.539 | -- | -- | -- | 0.0578 | 13 | -- | -- | -- | -- |
| 50.52 | 0.331 | 10.5 | -- | -- | 1.02 | -- | -- | -0.177 | -- | 17.99 | 47520 | -- | -- |
| 88.68 | 0.44 | 10.4 | -- | -- | -- | -- | -- | 0.0495 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.36 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 3 |
| 3 | 24.69 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 1 |
| 5 | 24.72 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 3 |
| 6 | 24.81 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 15 |
| 13 | 24.98 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 21 |
| 22 | 25.12 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 11 |
| 26 | 25.13 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 20 |
| 42 | 25.26 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 12 |
| 44 | 25.26 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 14 |
| 54 | 25.35 | temperature | 15 | 90 | > th | dose dependent | rect. | 5 | 12 |
| 69 | 25.45 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 17 |
| 71 | 25.46 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 13 |
| 77 | 25.47 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 13 |
| 78 | 25.47 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 5 |
| 90 | 25.50 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 15 |
| 118 | 25.59 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 120 | 25.59 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 149 | 25.65 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 162 | 25.67 | temperature | 15 | 720 | > th | dose dependent | sin | 6 | NA |
| 191 | 25.72 | temperature | 20 | 720 | > th | dose independent | sin | 6 | NA |
| 193 | 25.72 | temperature | 25 | 720 | < th | dose dependent | sin | 5 | NA |
| 209 | 25.75 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 8 |
| 215 | 25.76 | temperature | 20 | 720 | < th | dose independent | sin | 5 | NA |
| 226 | 25.77 | temperature | 30 | 10 | < th | dose dependent | sin | 2 | NA |
| 238 | 25.78 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 15 |
| 248 | 25.79 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 263 | 25.81 | temperature | 15 | 10 | > th | dose dependent | sin | 3 | NA |
| 278 | 25.82 | temperature | 20 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 287 | 25.83 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 13 |
| 323 | 25.87 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 4 |
| 353 | 25.89 | temperature | 15 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 528 | 26.06 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 1 |
| 601 | 26.11 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 12 |
| 638 | 26.13 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 641 | 26.13 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 677 | 26.17 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 3 |
| 901 | 26.35 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 16 |
| 923 | 26.37 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 10 |