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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0146100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to AtPIP5K1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.23 (0.04) R2 : 0.54
β1 : 2.07 (0.278) R2dD : 0.45 R2D : -0.172
β2 : 0.823 (0.0745) R2dC : 0.144 R2C : 0.174
β3 : -0.485 (0.358) R2dE : 0.0246 R2E : -0.273
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 16.6 (3.13) R2dD*E : 0.532 R2D*E : 0.00341
γ1 : 0.294 (0.0591) R2dN8 : 0.0344 R2N8 : -0.0456
σ : 0.51
deviance : 119.89
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_____
C
peak time of C : 20.2
E
wheather : temperature
threshold : 31.2
memory length : 645
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
109.15 0.491 3.25 2.04 0.85 -0.495 1.89 15.6 0.28 20.4 31.27 642 -- --
126.85 0.525 3.41 0.726 1.16 0.729 2.45 -- 0.197 19.8 29.44 3659 -- --
119.89 0.51 3.23 2.07 0.823 -0.485 -- 16.6 0.294 20.2 31.2 645 -- --
139.31 0.55 3.4 0.612 1.05 0.918 -- -- 0.229 19.6 29.97 2125 -- --
151.98 0.574 3.19 2.07 -- -0.142 -- 17.7 0.325 -- 31.19 631 -- --
145.33 0.565 3.42 0.935 1.18 -- 2.62 -- 0.173 19.9 -- -- -- --
165.37 0.602 3.42 0.866 1.19 -- -- -- 0.177 19.8 -- -- -- --
155.13 0.58 3.43 0.46 -- 1.4 -- -- -0.13 -- 28.2 560 -- --
149.15 0.569 3.4 -- 1.05 1.1 -- -- 0.244 19.6 30 2140 -- --
241.28 0.726 3.39 0.852 -- -- -- -- 0.16 -- -- -- -- --
185.15 0.637 3.44 -- 1.18 -- -- -- 0.0801 19.8 -- -- -- --
160.69 0.59 3.44 -- -- 1.65 -- -- -0.0526 -- 28.57 588 -- --
260.4 0.753 3.41 -- -- -- -- -- 0.0652 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 108.46 temperature 30 720 > th dose dependent rect. 11 4
3 108.60 temperature 30 720 > th dose independent rect. 12 1
4 108.66 temperature 30 720 > th dose dependent rect. 8 7
18 108.69 temperature 30 720 > th dose dependent rect. 12 1
25 109.69 temperature 30 720 > th dose dependent sin 5 NA
63 110.21 temperature 30 720 < th dose independent rect. 11 2
88 110.97 temperature 30 720 < th dose independent rect. 10 4
119 112.33 temperature 30 720 < th dose independent rect. 19 19
140 112.68 temperature 30 720 < th dose independent rect. 24 14
159 112.85 temperature 30 720 < th dose independent rect. 5 9
160 112.92 temperature 30 720 > th dose dependent no NA NA
287 113.23 temperature 30 720 < th dose independent rect. 3 11
356 113.95 temperature 20 720 > th dose dependent rect. 6 12
367 114.05 temperature 20 720 > th dose dependent sin 0 NA
382 114.24 temperature 30 720 > th dose independent sin 4 NA
417 114.49 temperature 30 720 < th dose independent sin 4 NA
524 115.11 temperature 30 720 < th dose independent rect. 16 22
574 115.36 temperature 15 270 > th dose dependent sin 17 NA
579 115.38 temperature 30 720 > th dose independent rect. 16 22
586 115.43 temperature 30 270 < th dose dependent rect. 11 16
642 115.79 temperature 30 720 < th dose independent rect. 19 22
704 116.12 temperature 20 270 > th dose dependent rect. 15 9
733 116.33 temperature 30 4320 < th dose dependent rect. 1 1
738 116.37 temperature 15 4320 > th dose dependent rect. 1 1
755 116.46 temperature 10 4320 > th dose dependent rect. 23 3
761 116.48 temperature 30 4320 < th dose dependent rect. 23 3
840 116.81 temperature 20 270 > th dose dependent rect. 9 15
861 116.90 temperature 30 720 < th dose independent rect. 24 22
901 117.02 temperature 30 270 < th dose dependent sin 18 NA
973 117.28 temperature 30 720 < th dose independent rect. 9 22
987 117.34 temperature 30 720 < th dose independent rect. 9 13