Os11g0145500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SPla/RYanodine receptor SPRY domain containing protein.
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Os11g0145500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SPla/RYanodine receptor SPRY domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 82.2 | 0.426 | 7.9 | 1.93 | 0.225 | 1.03 | -0.697 | 0.0229 | 0.39 | 19.5 | 22.6 | 2188 | -- | -- |
| 82.06 | 0.422 | 7.9 | 1.96 | 0.241 | 1.05 | -0.658 | -- | 0.37 | 19 | 22.3 | 1931 | -- | -- |
| 82.62 | 0.423 | 7.9 | 1.94 | 0.229 | 1.04 | -- | 0.0445 | 0.377 | 17.4 | 22.2 | 1871 | -- | -- |
| 82.57 | 0.423 | 7.9 | 1.96 | 0.252 | 1.05 | -- | -- | 0.371 | 17.3 | 22.28 | 1876 | -- | -- |
| 85.01 | 0.429 | 7.91 | 1.91 | -- | 1.07 | -- | 0.104 | 0.354 | -- | 22 | 1365 | -- | -- |
| 123.28 | 0.521 | 7.98 | 1.54 | 0.217 | -- | -0.584 | -- | 0.00702 | 18.4 | -- | -- | -- | -- |
| 123.5 | 0.52 | 7.98 | 1.55 | 0.238 | -- | -- | -- | 0.00678 | 16.8 | -- | -- | -- | -- |
| 84.73 | 0.429 | 7.9 | 1.92 | -- | 1.05 | -- | -- | 0.355 | -- | 22.22 | 1373 | -- | -- |
| 177.72 | 0.624 | 7.99 | -- | 0.291 | 0.391 | -- | -- | -0.0634 | 15.2 | 22.28 | 1876 | -- | -- |
| 126.51 | 0.526 | 7.98 | 1.54 | -- | -- | -- | -- | 0.000573 | -- | -- | -- | -- | -- |
| 186.77 | 0.639 | 8.02 | -- | 0.21 | -- | -- | -- | -0.166 | 17 | -- | -- | -- | -- |
| 172.16 | 0.611 | 7.98 | -- | -- | 0.587 | -- | -- | 0.0114 | -- | 22.39 | 941 | -- | -- |
| 189.1 | 0.642 | 8.02 | -- | -- | -- | -- | -- | -0.17 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 79.70 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 2 | 79.98 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 3 | 80.09 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 10 | 80.91 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 20 |
| 17 | 81.61 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 19 | 81.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 20 | 81.68 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 34 | 82.15 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 11 |
| 37 | 82.27 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 11 |
| 44 | 82.37 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 16 |
| 48 | 82.40 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 16 |
| 58 | 82.47 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 74 | 82.53 | temperature | 15 | 1440 | > th | dose dependent | sin | 11 | NA |
| 96 | 82.61 | temperature | 30 | 1440 | < th | dose dependent | sin | 12 | NA |
| 192 | 82.92 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 329 | 83.26 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 330 | 83.26 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 23 |
| 400 | 83.41 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 589 | 83.79 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 629 | 83.86 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 729 | 84.01 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 2 |
| 762 | 84.06 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 3 |
| 791 | 84.09 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 815 | 84.13 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 986 | 84.38 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 23 |