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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0144500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.08 (0.0388) R2 : 0.00397
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.11 (0.0817) R2dN8 : 0.00513 R2N8 : 0.00397
σ : 0.731
deviance : 245.18
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
232.37 0.716 3.07 -0.436 0.0652 -0.27 0.378 0.462 -0.033 14.9 1005 126 -- --
233.22 0.711 3.07 -0.441 0.0696 -0.274 0.394 -- -0.0478 14.8 1005 250 -- --
232.85 0.711 3.07 -0.428 0.0675 -0.273 -- 0.467 -0.0298 15.1 1005 128 -- --
233.55 0.712 3.07 -0.429 0.0701 -0.28 -- -- -0.0373 14.6 1005 268 -- --
233.1 0.711 3.07 -0.43 -- -0.281 -- 0.46 -0.0276 -- 1005 124 -- --
238.93 0.725 3.1 -0.433 0.108 -- 0.486 -- -0.158 15.9 -- -- -- --
239.59 0.725 3.1 -0.426 0.115 -- -- -- -0.155 16.6 -- -- -- --
233.82 0.712 3.07 -0.435 -- -0.287 -- -- -0.0381 -- 1005 260 -- --
238.44 0.719 3.06 -- 0.088 -0.278 -- -- 0.00266 14.9 1005 273 -- --
240.3 0.724 3.1 -0.43 -- -- -- -- -0.158 -- -- -- -- --
244.37 0.731 3.09 -- 0.123 -- -- -- -0.107 16.5 -- -- -- --
238.77 0.72 3.06 -- -- -0.286 -- -- 0.00938 -- 1005 260 -- --
245.18 0.731 3.08 -- -- -- -- -- -0.11 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 222.38 wind 9 10 > th dose dependent rect. 17 1
5 223.19 atmosphere 1000 10 < th dose independent rect. 24 11
6 223.28 atmosphere 1000 10 < th dose independent rect. 4 7
19 223.40 atmosphere 1000 10 < th dose independent rect. 8 2
20 223.40 atmosphere 1000 90 < th dose independent rect. 7 3
22 223.42 atmosphere 1000 90 < th dose independent rect. 8 1
25 223.42 atmosphere 1000 10 < th dose independent rect. 2 9
44 223.51 atmosphere 1000 270 < th dose independent rect. 5 2
62 224.27 atmosphere 1000 90 < th dose dependent rect. 9 1
82 224.68 atmosphere 1000 90 < th dose dependent rect. 5 5
98 224.87 atmosphere 1000 270 < th dose dependent rect. 6 1
111 225.42 atmosphere 1000 30 < th dose dependent rect. 2 9
114 225.45 atmosphere 1000 10 < th dose dependent rect. 24 11
137 226.18 atmosphere 1000 720 < th dose dependent rect. 22 3
139 226.22 wind 7 10 > th dose independent rect. 17 1
149 226.72 wind 1 1440 < th dose dependent rect. 15 1
154 226.86 radiation 1 10 < th dose independent rect. 11 3
162 226.86 radiation 1 10 < th dose dependent rect. 11 3
188 226.98 temperature 20 30 < th dose dependent rect. 12 2
191 227.00 temperature 20 30 < th dose independent rect. 12 2
201 227.06 radiation 1 10 < th dose independent rect. 13 1
211 227.06 radiation 1 10 < th dose dependent rect. 13 1
240 227.49 atmosphere 1000 720 < th dose independent rect. 22 4
242 227.51 atmosphere 1000 720 < th dose independent rect. 23 2
282 227.85 wind 1 1440 < th dose independent rect. 15 1
304 228.30 wind 7 10 > th dose independent rect. 17 12
309 228.32 wind 5 90 < th dose independent rect. 12 1
312 228.33 wind 3 90 < th dose independent rect. 14 5
353 228.94 atmosphere 1000 90 < th dose independent rect. 18 16
354 228.94 wind 7 10 > th dose dependent rect. 17 17
355 228.96 atmosphere 1000 10 < th dose independent rect. 19 16
378 229.17 wind 5 90 < th dose dependent rect. 14 5
429 229.61 atmosphere 1005 90 > th dose independent rect. 14 22
430 229.63 atmosphere 1005 10 < th dose independent rect. 18 1
441 229.68 wind 5 10 < th dose dependent rect. 15 5
449 229.75 wind 7 90 < th dose dependent rect. 12 1
458 229.85 radiation 10 90 > th dose independent rect. 12 1
486 230.05 radiation 40 30 > th dose dependent rect. 9 1
514 230.19 humidity 80 90 < th dose independent rect. 12 1
519 230.22 radiation 10 4320 < th dose dependent rect. 12 3
523 230.24 atmosphere 1005 10 < th dose independent rect. 17 5
565 230.46 wind 7 10 < th dose independent rect. 12 2
570 230.51 wind 5 270 < th dose dependent rect. 15 1
592 230.67 radiation 20 90 < th dose independent rect. 9 4
612 230.84 atmosphere 1005 90 > th dose dependent rect. 12 1
618 230.87 atmosphere 1000 270 < th dose independent sin 8 NA
619 230.87 humidity 90 4320 > th dose independent rect. 14 1
636 230.99 radiation 1 90 < th dose dependent rect. 16 1
666 231.03 radiation 1 90 > th dose dependent rect. 12 1
672 231.06 radiation 1 90 < th dose independent rect. 16 1
686 231.15 radiation 30 90 < th dose dependent rect. 19 18
689 231.17 radiation 20 90 < th dose independent rect. 19 18
691 231.18 wind 1 10 < th dose dependent rect. 2 2
695 231.20 humidity 90 10 < th dose independent rect. 12 2
705 231.24 wind 5 90 < th dose independent rect. 14 13
716 231.29 wind 3 270 < th dose independent rect. 15 1
722 231.31 atmosphere 1000 270 > th dose independent sin 9 NA
729 231.34 humidity 90 4320 < th dose independent rect. 14 1
735 231.35 radiation 40 720 < th dose independent rect. 14 19
738 231.36 atmosphere 1015 4320 < th dose independent rect. 13 1
739 231.36 humidity 50 270 < th dose independent rect. 15 2
741 231.36 wind 5 10 < th dose independent rect. 15 10
747 231.37 atmosphere 995 30 > th dose dependent rect. 14 22
748 231.38 atmosphere 1015 4320 > th dose independent rect. 13 1
767 231.38 atmosphere 1015 4320 > th dose dependent rect. 12 1
778 231.41 wind 1 1440 > th dose independent rect. 15 1
835 231.54 wind 5 10 < th dose independent rect. 15 13
845 231.57 atmosphere 1000 10 < th dose dependent rect. 18 17
852 231.60 atmosphere 1000 10 < th dose dependent rect. 20 15
865 231.64 radiation 40 720 < th dose independent rect. 14 10
866 231.64 wind 5 90 < th dose independent rect. 14 21
872 231.66 humidity 50 270 < th dose dependent rect. 15 2
907 231.70 atmosphere 1000 10 < th dose dependent rect. 16 19
910 231.72 wind 1 30 < th dose dependent rect. 15 13
938 231.80 wind 3 10 > th dose independent rect. 12 6
941 231.80 radiation 20 90 < th dose dependent rect. 9 4
966 231.88 atmosphere 995 90 > th dose independent rect. 13 23
978 231.91 atmosphere 1005 90 < th dose independent rect. 24 22
980 231.92 radiation 30 90 < th dose independent rect. 14 13
987 231.93 atmosphere 1000 720 < th dose dependent sin 11 NA