Os11g0143400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA polymerase Rpb5, N-terminal domain containing protein.
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Os11g0143400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA polymerase Rpb5, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.52 | 0.246 | 9.97 | 1.1 | 0.153 | -0.55 | 0.289 | -0.216 | 0.0492 | 9.35 | 26.24 | 9 | -- | -- |
| 27.6 | 0.247 | 9.97 | 1.07 | 0.151 | -0.526 | 0.347 | -- | 0.0437 | 9.57 | 26.51 | 8 | -- | -- |
| 27.77 | 0.245 | 9.96 | 1.13 | 0.152 | -0.572 | -- | -0.357 | 0.0502 | 8.66 | 26.54 | 4 | -- | -- |
| 27.98 | 0.246 | 9.97 | 1.07 | 0.154 | -0.55 | -- | -- | 0.0375 | 8.71 | 26.7 | 3 | -- | -- |
| 29.05 | 0.251 | 9.97 | 1.11 | -- | -0.608 | -- | -0.36 | 0.0441 | -- | 26.42 | 3 | -- | -- |
| 31.89 | 0.265 | 9.94 | 1.19 | 0.24 | -- | 0.369 | -- | 0.157 | 11.4 | -- | -- | -- | -- |
| 32.48 | 0.267 | 9.94 | 1.2 | 0.238 | -- | -- | -- | 0.159 | 11.3 | -- | -- | -- | -- |
| 29.28 | 0.252 | 9.98 | 1.07 | -- | -0.589 | -- | -- | 0.0294 | -- | 26.69 | 2 | -- | -- |
| 55.65 | 0.349 | 10 | -- | 0.184 | -0.958 | -- | -- | -0.161 | 5.72 | 26.7 | 3 | -- | -- |
| 36.03 | 0.28 | 9.95 | 1.2 | -- | -- | -- | -- | 0.157 | -- | -- | -- | -- | -- |
| 70.59 | 0.393 | 9.97 | -- | 0.227 | -- | -- | -- | 0.0248 | 10.9 | -- | -- | -- | -- |
| 57.02 | 0.352 | 10 | -- | -- | -0.922 | -- | -- | -0.148 | -- | 26 | 17 | -- | -- |
| 73.8 | 0.401 | 9.98 | -- | -- | -- | -- | -- | 0.0238 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.79 | temperature | 20.0 | 10 | > th | dose independent | rect. | 5 | 20 |
| 2 | 26.90 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 5 | 20 |
| 6 | 27.26 | temperature | 20.0 | 270 | > th | dose independent | rect. | 2 | 21 |
| 7 | 27.35 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 8 | 21 |
| 12 | 27.40 | temperature | 25.0 | 90 | < th | dose independent | rect. | 9 | 19 |
| 14 | 27.41 | temperature | 25.0 | 90 | < th | dose independent | rect. | 7 | 21 |
| 17 | 27.47 | temperature | 20.0 | 10 | > th | dose independent | rect. | 5 | 22 |
| 30 | 27.62 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 4 | 23 |
| 37 | 27.72 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 12 | 17 |
| 40 | 27.75 | temperature | 25.0 | 90 | < th | dose independent | rect. | 11 | 17 |
| 41 | 27.75 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 53 | 27.83 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 58 | 27.85 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 16 | 23 |
| 59 | 27.86 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 5 | 18 |
| 61 | 27.86 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 23 | 22 |
| 62 | 27.87 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 22 |
| 64 | 27.88 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 16 | 13 |
| 66 | 27.88 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 8 | 19 |
| 67 | 27.88 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 11 | 20 |
| 74 | 27.90 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 77 | 27.90 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 87 | 27.92 | temperature | 25.0 | 10 | < th | dose dependent | no | NA | NA |
| 95 | 27.92 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 111 | 27.94 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 112 | 27.94 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 120 | 27.95 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 143 | 27.97 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 153 | 27.99 | temperature | 25.0 | 720 | < th | dose dependent | sin | 21 | NA |
| 155 | 27.99 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 19 | 6 |
| 157 | 27.99 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 13 | 18 |
| 160 | 27.99 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 165 | 28.01 | temperature | 20.0 | 270 | > th | dose independent | rect. | 11 | 22 |
| 190 | 28.05 | wind | 7.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 191 | 28.05 | temperature | 20.0 | 10 | > th | dose independent | rect. | 5 | 14 |
| 200 | 28.06 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 5 | 14 |
| 215 | 28.08 | wind | 7.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 217 | 28.08 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 225 | 28.09 | temperature | 25.0 | 720 | < th | dose independent | rect. | 8 | 20 |
| 249 | 28.11 | temperature | 20.0 | 720 | > th | dose independent | rect. | 5 | 18 |
| 251 | 28.11 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 262 | 28.11 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 2 | 23 |
| 276 | 28.13 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 10 | 3 |
| 326 | 28.18 | temperature | 25.0 | 720 | > th | dose independent | rect. | 19 | 21 |
| 342 | 28.19 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 8 | 6 |
| 379 | 28.22 | temperature | 25.0 | 720 | > th | dose independent | rect. | 11 | 14 |
| 392 | 28.23 | temperature | 20.0 | 10 | > th | dose independent | rect. | 2 | 23 |
| 412 | 28.25 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 417 | 28.25 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 422 | 28.25 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 424 | 28.26 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 443 | 28.27 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 15 | 3 |
| 448 | 28.27 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 15 | 3 |
| 470 | 28.29 | wind | 9.0 | 14400 | > th | dose independent | rect. | 20 | 12 |
| 472 | 28.29 | wind | 9.0 | 14400 | < th | dose independent | rect. | 20 | 13 |
| 493 | 28.30 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 18 | 3 |
| 494 | 28.30 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 15 | 3 |
| 518 | 28.31 | temperature | 20.0 | 10 | > th | dose dependent | sin | 10 | NA |
| 627 | 28.36 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 3 |
| 630 | 28.36 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 20 | 11 |
| 655 | 28.37 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 11 | 14 |
| 696 | 28.39 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 12 | 10 |
| 699 | 28.39 | temperature | 20.0 | 10 | > th | dose independent | rect. | 11 | 23 |
| 737 | 28.41 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 8 | 16 |
| 744 | 28.41 | temperature | 25.0 | 720 | < th | dose independent | rect. | 21 | 23 |
| 790 | 28.43 | temperature | 25.0 | 720 | < th | dose independent | rect. | 11 | 23 |
| 791 | 28.43 | temperature | 25.0 | 720 | < th | dose independent | rect. | 19 | 23 |
| 857 | 28.45 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 882 | 28.47 | temperature | 25.0 | 720 | < th | dose independent | no | NA | NA |
| 946 | 28.49 | radiation | 1.0 | 90 | < th | dose independent | rect. | 5 | 23 |
| 965 | 28.50 | temperature | 20.0 | 270 | > th | dose independent | no | NA | NA |
| 966 | 28.50 | wind | 9.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 989 | 28.51 | temperature | 20.0 | 720 | > th | dose independent | sin | 22 | NA |
| 999 | 28.51 | temperature | 20.0 | 10 | > th | dose independent | rect. | 13 | 23 |