Os11g0140800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cytochrome c biogenesis protein, transmembrane region domain containing protein.
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Os11g0140800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cytochrome c biogenesis protein, transmembrane region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.11 | 0.226 | 11.8 | 0.0563 | 0.428 | -0.314 | -0.425 | -0.142 | -0.25 | 22.3 | 9.679 | 123 | -- | -- |
| 23.15 | 0.224 | 11.8 | 0.0567 | 0.422 | -0.31 | -0.556 | -- | -0.252 | 22.4 | 9.38 | 129 | -- | -- |
| 23.51 | 0.226 | 11.8 | 0.0195 | 0.375 | -0.266 | -- | -0.379 | -0.257 | 21.6 | 12.07 | 119 | -- | -- |
| 24.41 | 0.23 | 11.8 | 0.0228 | 0.377 | -0.272 | -- | -- | -0.26 | 21.7 | 12.47 | 111 | -- | -- |
| 26.96 | 0.242 | 11.8 | 0.0707 | -- | -0.289 | -- | 0.0916 | -0.296 | -- | 38.32 | 782 | -- | -- |
| 26.31 | 0.24 | 11.8 | 0.0606 | 0.278 | -- | -0.302 | -- | -0.243 | 19.5 | -- | -- | -- | -- |
| 26.48 | 0.241 | 11.8 | 0.0691 | 0.283 | -- | -- | -- | -0.242 | 19 | -- | -- | -- | -- |
| 26.63 | 0.24 | 11.8 | 0.059 | -- | -0.256 | -- | -- | -0.26 | -- | 9.99 | 819 | -- | -- |
| 24.43 | 0.23 | 11.8 | -- | 0.384 | -0.277 | -- | -- | -0.271 | 21.7 | 12.46 | 101 | -- | -- |
| 30.67 | 0.259 | 11.8 | 0.0633 | -- | -- | -- | -- | -0.248 | -- | -- | -- | -- | -- |
| 26.6 | 0.241 | 11.8 | -- | 0.282 | -- | -- | -- | -0.25 | 19 | -- | -- | -- | -- |
| 26.3 | 0.239 | 11.8 | -- | -- | -0.362 | -- | -- | -0.273 | -- | 6.84 | 850 | -- | -- |
| 30.78 | 0.259 | 11.8 | -- | -- | -- | -- | -- | -0.255 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.92 | temperature | 25 | 720 | < th | dose independent | rect. | 18 | 8 |
| 10 | 22.05 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 14 |
| 11 | 22.09 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 12 |
| 29 | 22.24 | temperature | 25 | 720 | < th | dose independent | sin | 13 | NA |
| 30 | 22.24 | temperature | 15 | 14400 | < th | dose independent | rect. | 6 | 4 |
| 34 | 22.25 | temperature | 15 | 14400 | < th | dose independent | rect. | 5 | 6 |
| 40 | 22.33 | temperature | 15 | 14400 | < th | dose independent | sin | 1 | NA |
| 42 | 22.34 | temperature | 15 | 14400 | > th | dose independent | rect. | 6 | 5 |
| 48 | 22.38 | temperature | 15 | 14400 | < th | dose independent | rect. | 5 | 22 |
| 54 | 22.40 | temperature | 15 | 14400 | < th | dose independent | rect. | 5 | 10 |
| 64 | 22.42 | temperature | 15 | 14400 | > th | dose independent | rect. | 6 | 20 |
| 72 | 22.43 | temperature | 15 | 14400 | < th | dose independent | rect. | 4 | 19 |
| 74 | 22.44 | temperature | 25 | 720 | > th | dose independent | rect. | 19 | 5 |
| 88 | 22.45 | temperature | 15 | 14400 | < th | dose independent | rect. | 24 | 23 |
| 97 | 22.46 | temperature | 15 | 14400 | < th | dose independent | rect. | 21 | 23 |
| 99 | 22.47 | temperature | 25 | 720 | > th | dose independent | rect. | 20 | 3 |
| 106 | 22.47 | temperature | 15 | 14400 | < th | dose independent | rect. | 15 | 22 |
| 111 | 22.48 | temperature | 15 | 14400 | < th | dose independent | no | NA | NA |
| 113 | 22.48 | temperature | 15 | 14400 | > th | dose independent | rect. | 6 | 9 |
| 128 | 22.48 | temperature | 15 | 14400 | < th | dose independent | rect. | 10 | 23 |
| 135 | 22.49 | temperature | 15 | 14400 | > th | dose independent | sin | 23 | NA |
| 150 | 22.50 | temperature | 15 | 14400 | > th | dose independent | rect. | 19 | 6 |
| 151 | 22.50 | temperature | 15 | 14400 | < th | dose independent | rect. | 20 | 6 |
| 154 | 22.50 | temperature | 15 | 14400 | < th | dose independent | rect. | 16 | 11 |
| 176 | 22.51 | temperature | 15 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 198 | 22.51 | temperature | 15 | 14400 | < th | dose independent | rect. | 24 | 20 |
| 218 | 22.53 | temperature | 15 | 14400 | < th | dose independent | rect. | 22 | 4 |
| 221 | 22.53 | temperature | 15 | 14400 | > th | dose independent | rect. | 5 | 13 |
| 266 | 22.55 | temperature | 15 | 14400 | < th | dose independent | sin | 15 | NA |
| 268 | 22.55 | temperature | 15 | 14400 | > th | dose independent | rect. | 22 | 2 |
| 274 | 22.55 | temperature | 15 | 14400 | > th | dose independent | rect. | 16 | 10 |
| 345 | 22.58 | humidity | 60 | 43200 | < th | dose dependent | rect. | 24 | 8 |
| 360 | 22.59 | humidity | 60 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 363 | 22.60 | temperature | 15 | 14400 | > th | dose independent | sin | 17 | NA |
| 367 | 22.60 | humidity | 60 | 43200 | > th | dose independent | rect. | 3 | 4 |
| 396 | 22.62 | temperature | 15 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 407 | 22.62 | temperature | 25 | 720 | > th | dose dependent | rect. | 21 | 1 |
| 444 | 22.64 | temperature | 25 | 720 | > th | dose dependent | rect. | 19 | 11 |
| 466 | 22.66 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 14 |
| 532 | 22.70 | temperature | 15 | 14400 | > th | dose independent | rect. | 21 | 23 |
| 533 | 22.70 | temperature | 15 | 14400 | > th | dose independent | rect. | 24 | 23 |
| 562 | 22.73 | temperature | 15 | 14400 | > th | dose independent | no | NA | NA |
| 572 | 22.73 | temperature | 15 | 14400 | > th | dose independent | rect. | 2 | 21 |
| 576 | 22.73 | temperature | 15 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 594 | 22.74 | temperature | 15 | 14400 | > th | dose independent | rect. | 10 | 23 |
| 694 | 22.79 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 9 |
| 737 | 22.82 | temperature | 15 | 14400 | > th | dose independent | rect. | 24 | 20 |
| 834 | 22.90 | humidity | 50 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 864 | 22.92 | temperature | 15 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 903 | 22.96 | temperature | 15 | 14400 | < th | dose independent | rect. | 7 | 10 |
| 925 | 22.97 | humidity | 50 | 43200 | < th | dose dependent | rect. | 19 | 15 |
| 988 | 23.02 | humidity | 70 | 43200 | < th | dose independent | rect. | 24 | 7 |