Os11g0140700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os11g0140700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 98.41 | 0.466 | 10.1 | -1.26 | 0.494 | 1.29 | 0.117 | -1.93 | -0.704 | 17.2 | 23.18 | 87 | -- | -- |
| 100.39 | 0.467 | 10.1 | -0.986 | 0.511 | 1.19 | -0.357 | -- | -0.632 | 17 | 22.87 | 84 | -- | -- |
| 98.25 | 0.462 | 10.1 | -1.25 | 0.502 | 1.3 | -- | -1.81 | -0.705 | 17.3 | 23.01 | 69 | -- | -- |
| 100.03 | 0.466 | 10.1 | -0.964 | 0.546 | 1.16 | -- | -- | -0.619 | 17.4 | 22.92 | 47 | -- | -- |
| 106.75 | 0.481 | 10.1 | -1.41 | -- | 1.71 | -- | -2.46 | -0.771 | -- | 23.3 | 148 | -- | -- |
| 121.74 | 0.517 | 10 | -0.738 | 0.964 | -- | 0.268 | -- | -0.447 | 16.3 | -- | -- | -- | -- |
| 121.93 | 0.517 | 10 | -0.735 | 0.966 | -- | -- | -- | -0.446 | 16.3 | -- | -- | -- | -- |
| 110.12 | 0.489 | 10.1 | -1.05 | -- | 1.52 | -- | -- | -0.671 | -- | 23.2 | 139 | -- | -- |
| 123.06 | 0.517 | 10 | -- | 0.641 | 0.881 | -- | -- | -0.471 | 17 | 23.2 | 57 | -- | -- |
| 172.11 | 0.613 | 10 | -0.774 | -- | -- | -- | -- | -0.471 | -- | -- | -- | -- | -- |
| 136.19 | 0.546 | 10 | -- | 0.98 | -- | -- | -- | -0.364 | 16.3 | -- | -- | -- | -- |
| 137.59 | 0.546 | 10 | -- | -- | 1.36 | -- | -- | -0.5 | -- | 24.15 | 134 | -- | -- |
| 187.9 | 0.64 | 10 | -- | -- | -- | -- | -- | -0.386 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 97.37 | temperature | 20 | 10 | > th | dose dependent | rect. | 24 | 22 |
| 4 | 98.45 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 14 |
| 26 | 99.73 | temperature | 25 | 30 | > th | dose dependent | rect. | 7 | 23 |
| 32 | 99.86 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 18 |
| 34 | 99.89 | temperature | 25 | 30 | > th | dose dependent | rect. | 7 | 19 |
| 55 | 100.25 | temperature | 25 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 78 | 100.55 | temperature | 30 | 30 | < th | dose dependent | sin | 21 | NA |
| 107 | 100.80 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 115 | 100.83 | temperature | 25 | 270 | > th | dose dependent | rect. | 13 | 22 |
| 140 | 100.95 | temperature | 25 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 142 | 100.96 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 175 | 101.17 | temperature | 15 | 90 | > th | dose dependent | sin | 21 | NA |
| 179 | 101.21 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 200 | 101.27 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 19 |
| 212 | 101.33 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 217 | 101.34 | humidity | 50 | 720 | > th | dose dependent | rect. | 9 | 14 |
| 246 | 101.42 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 273 | 101.52 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 19 |
| 285 | 101.57 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 382 | 101.88 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 438 | 102.07 | temperature | 15 | 720 | > th | dose dependent | sin | 1 | NA |
| 483 | 102.20 | humidity | 50 | 720 | > th | dose dependent | rect. | 1 | 22 |
| 515 | 102.28 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 561 | 102.38 | humidity | 80 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 580 | 102.46 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 621 | 102.54 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 13 |
| 718 | 102.72 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 5 |
| 773 | 102.84 | humidity | 50 | 720 | > th | dose dependent | rect. | 9 | 21 |
| 827 | 102.93 | humidity | 80 | 1440 | < th | dose independent | sin | 1 | NA |
| 874 | 103.03 | humidity | 80 | 720 | < th | dose dependent | rect. | 14 | 21 |
| 915 | 103.10 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |