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Os11g0139700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.5 (0.0381) R2 : 0.734
β1 : -1.61 (0.14) R2dD : 0.0817 R2D : 0.116
β2 : 2.28 (0.0959) R2dC : 0.373 R2C : 0.497
β3 : -1.93 (0.152) R2dE : 0.111 R2E : 0.251
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.441 (0.0831) R2dN8 : 0.0239 R2N8 : 0.0137
σ : 0.707
deviance : 227.74
__
_____
C
peak time of C : 22.7
E
wheather : temperature
threshold : 23.1
memory length : 7
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
221.38 0.699 10.4 -1.05 2.25 -2.19 0.661 3.62 0.606 22.6 23.2 7 -- --
227.73 0.708 10.5 -1.61 2.28 -1.93 0.112 -- 0.438 22.7 23.2 7 -- --
221.61 0.699 10.4 -1.17 2.24 -2.19 -- 3.07 0.576 22.7 23.2 7 -- --
227.74 0.707 10.5 -1.61 2.28 -1.93 -- -- 0.441 22.7 23.1 7 -- --
491.06 1.04 10.3 -0.706 -- -3.49 -- 3.64 0.867 -- 21.7 5 -- --
284.94 0.791 10.5 -1.95 2.73 -- 0.172 -- 0.166 23.6 -- -- -- --
285.07 0.791 10.5 -1.96 2.73 -- -- -- 0.165 23.6 -- -- -- --
501.03 1.04 10.4 -1.27 -- -3.25 -- -- 0.71 -- 21.28 2 -- --
291.95 0.8 10.4 -- 2.17 -2.36 -- -- 0.7 22.5 22.5 12 -- --
754.71 1.28 10.5 -1.88 -- -- -- -- 0.197 -- -- -- -- --
386.41 0.92 10.5 -- 2.71 -- -- -- 0.383 23.6 -- -- -- --
541.79 1.08 10.3 -- -- -3.51 -- -- 0.889 -- 21.1 2 -- --
848.32 1.36 10.4 -- -- -- -- -- 0.406 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 212.08 humidity 60 10 > th dose dependent rect. 9 11
10 217.01 humidity 50 10 > th dose dependent sin 21 NA
21 220.20 temperature 20 10 > th dose dependent rect. 20 22
33 221.45 temperature 20 10 > th dose dependent sin 22 NA
37 222.08 humidity 90 10 < th dose dependent sin 21 NA
46 222.74 humidity 50 90 > th dose dependent rect. 15 5
53 222.95 temperature 10 270 > th dose dependent rect. 9 15
58 223.37 humidity 50 270 > th dose dependent rect. 13 7
60 223.40 radiation 1 270 < th dose independent rect. 5 14
62 223.50 radiation 1 270 < th dose dependent rect. 5 14
63 223.52 radiation 20 10 < th dose dependent sin 19 NA
65 223.57 temperature 10 10 > th dose dependent sin 22 NA
70 224.04 temperature 30 10 < th dose dependent rect. 6 14
79 224.63 temperature 30 270 < th dose independent rect. 14 6
97 225.39 temperature 25 10 > th dose dependent rect. 10 23
112 225.82 humidity 90 10 < th dose dependent rect. 23 19
115 225.91 humidity 90 270 < th dose dependent rect. 19 20
119 226.04 temperature 10 270 > th dose dependent rect. 19 20
124 226.22 humidity 90 10 < th dose dependent rect. 6 12
127 226.26 temperature 20 10 > th dose dependent rect. 10 15
132 226.37 humidity 50 270 > th dose dependent rect. 23 21
133 226.40 radiation 10 10 > th dose independent sin 19 NA
134 226.44 humidity 60 10 > th dose dependent rect. 15 5
138 226.58 humidity 90 10 < th dose dependent rect. 20 22
161 226.97 humidity 70 10 > th dose independent rect. 9 11
168 227.11 temperature 20 10 > th dose dependent rect. 23 17
172 227.15 temperature 20 10 > th dose dependent rect. 10 17
175 227.23 humidity 50 270 > th dose dependent rect. 1 19
187 227.40 temperature 30 10 < th dose dependent rect. 3 17
201 227.58 radiation 1 30 > th dose independent sin 22 NA
207 227.78 humidity 50 270 > th dose dependent rect. 3 16
208 227.79 humidity 50 10 > th dose dependent rect. 15 21
214 227.87 temperature 20 10 > th dose dependent rect. 10 8
262 228.45 humidity 50 10 > th dose dependent rect. 13 23
288 228.79 temperature 30 10 < th dose dependent rect. 12 8
292 228.83 humidity 90 270 < th dose dependent rect. 9 6
296 228.91 temperature 20 10 > th dose dependent rect. 7 11
312 229.14 humidity 90 10 < th dose dependent rect. 10 8
332 229.43 temperature 30 90 < th dose dependent rect. 13 8
356 229.61 temperature 25 10 > th dose dependent rect. 5 13
357 229.61 temperature 25 10 > th dose dependent rect. 17 23
386 229.94 radiation 1 30 < th dose independent sin 22 NA
425 230.36 humidity 50 10 > th dose dependent rect. 15 23
426 230.37 humidity 60 270 > th dose independent rect. 13 7
435 230.55 temperature 30 10 < th dose dependent sin 22 NA
440 230.64 temperature 30 90 < th dose dependent rect. 1 20
441 230.65 humidity 50 270 > th dose independent rect. 15 4
468 230.88 temperature 25 90 < th dose independent rect. 5 16
472 230.94 humidity 90 720 < th dose dependent rect. 11 3
477 231.02 temperature 30 90 < th dose dependent rect. 15 6
519 231.50 temperature 25 10 > th dose dependent rect. 6 22
530 231.60 humidity 70 10 > th dose independent rect. 3 17
531 231.60 temperature 25 10 > th dose dependent no NA NA
536 231.63 temperature 25 10 > th dose dependent rect. 3 23
549 231.71 temperature 25 270 < th dose independent rect. 23 21
558 231.76 humidity 90 10 < th dose dependent rect. 10 15
571 231.83 atmosphere 1005 270 > th dose independent rect. 15 4
600 232.10 humidity 80 270 < th dose independent rect. 8 7
603 232.10 temperature 25 10 > th dose dependent rect. 23 23
618 232.19 humidity 70 10 > th dose independent sin 21 NA
646 232.34 humidity 50 270 > th dose dependent rect. 16 1
669 232.46 humidity 90 10 < th dose dependent rect. 17 23
699 232.64 temperature 10 270 > th dose dependent rect. 6 9
700 232.64 humidity 90 10 < th dose dependent rect. 6 19
730 232.78 temperature 25 90 > th dose independent rect. 20 22
740 232.82 radiation 1 30 < th dose independent rect. 5 15
756 232.88 temperature 25 90 < th dose independent rect. 1 20
766 232.94 humidity 60 270 > th dose independent rect. 2 17
778 233.00 humidity 90 10 < th dose dependent rect. 10 23
815 233.21 radiation 10 10 < th dose dependent rect. 7 13
860 233.49 humidity 80 270 > th dose independent rect. 1 19
920 233.79 humidity 90 10 < th dose dependent rect. 2 23
936 233.86 temperature 25 90 < th dose independent rect. 3 18
939 233.87 humidity 50 270 > th dose dependent rect. 13 21
952 233.93 temperature 30 90 < th dose dependent rect. 1 22
974 234.04 temperature 25 90 < th dose independent rect. 1 22