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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0139400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF250 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.09 (0.0412) R2 : 0.2
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.39 (0.137) R2dE : 0.183 R2E : 0.186
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.222 (0.0869) R2dN8 : 0.0146 R2N8 : 0.0175
σ : 0.774
deviance : 276.26
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 3.69
memory length : 311
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 8.49
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
261.08 0.759 3.14 -0.32 0.412 1.62 -0.628 -4.3 0.0876 23.3 10.29 300 7.33 --
272.97 0.77 3.11 -0.0256 0.374 1.29 -0.458 -- 0.152 22.5 10.17 315 7.56 --
261.98 0.754 3.14 -0.252 0.372 1.56 -- -3.99 0.0865 23.2 10.4 328 7.56 --
269.95 0.765 3.1 0.12 0.307 1.36 -- -- 0.233 23.3 3.69 280 8.06 --
268.7 0.763 3.13 -0.257 -- 1.48 -- -3.72 0.102 -- 10.24 368 8 --
300.57 0.813 3.09 0.13 0.835 -- -0.746 -- 0.311 19.1 -- -- -- --
302.04 0.814 3.09 0.144 0.833 -- -- -- 0.309 19.1 -- -- -- --
276.08 0.774 3.09 0.124 -- 1.4 -- -- 0.233 -- 4.02 303 8.45 --
270.1 0.765 3.09 -- 0.345 1.41 -- -- 0.211 23.6 3.7 284 8.15 --
338.65 0.86 3.07 0.128 -- -- -- -- 0.294 -- -- -- -- --
302.58 0.814 3.09 -- 0.831 -- -- -- 0.293 19.1 -- -- -- --
276.26 0.774 3.09 -- -- 1.39 -- -- 0.222 -- 3.69 311 8.49 --
339.08 0.859 3.07 -- -- -- -- -- 0.28 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 256.27 temperature 20.0 30 > th dose dependent rect. 16 5
3 257.27 humidity 80.0 10 < th dose independent rect. 16 4
8 259.31 atmosphere 1000.0 30 > th dose dependent rect. 16 3
9 259.60 humidity 80.0 270 < th dose independent rect. 15 2
10 259.69 radiation 10.0 270 > th dose independent rect. 16 2
28 260.05 atmosphere 1000.0 270 > th dose dependent rect. 15 2
30 260.30 radiation 1.0 270 > th dose dependent rect. 16 1
32 260.37 humidity 90.0 30 < th dose dependent rect. 16 5
46 261.54 temperature 25.0 270 > th dose dependent rect. 16 1
47 261.69 radiation 1.0 270 > th dose independent rect. 14 5
57 261.69 humidity 80.0 10 < th dose independent rect. 16 15
64 261.99 humidity 90.0 30 < th dose dependent rect. 16 3
72 262.50 humidity 80.0 10 < th dose independent rect. 16 9
81 262.81 wind 3.0 10 > th dose independent rect. 16 5
125 263.68 wind 1.0 30 > th dose dependent rect. 16 3
126 263.77 wind 1.0 10 > th dose dependent rect. 16 5
133 264.08 radiation 20.0 270 < th dose dependent sin 13 NA
135 264.13 atmosphere 1005.0 10 > th dose independent rect. 16 3
142 264.28 wind 3.0 30 > th dose independent rect. 16 3
166 264.68 radiation 10.0 270 > th dose independent sin 13 NA
168 264.74 humidity 90.0 270 < th dose dependent rect. 16 1
169 264.78 radiation 1.0 270 > th dose independent sin 15 NA
170 264.79 radiation 1.0 270 < th dose independent sin 15 NA
172 264.81 wind 1.0 270 > th dose dependent rect. 15 2
175 264.85 wind 3.0 270 > th dose independent rect. 15 2
178 264.93 humidity 90.0 30 < th dose dependent rect. 16 14
179 264.94 temperature 20.0 270 > th dose dependent rect. 14 4
183 265.15 humidity 90.0 30 < th dose dependent rect. 16 12
189 265.28 humidity 90.0 270 < th dose dependent rect. 14 4
230 265.79 temperature 25.0 270 > th dose independent rect. 16 1
255 265.97 humidity 50.0 30 > th dose independent rect. 19 21
262 266.04 atmosphere 1000.0 10 > th dose dependent rect. 16 5
318 266.46 temperature 10.0 1440 > th dose independent rect. 17 3
322 266.46 radiation 30.0 1440 < th dose independent rect. 17 3
328 266.46 temperature 10.0 1440 > th dose independent rect. 20 21
335 266.52 temperature 20.0 30 > th dose independent rect. 16 3
336 266.52 precipitation 0.1 30 < th dose independent rect. 16 3
337 266.52 precipitation 0.1 30 < th dose dependent rect. 16 3
338 266.56 temperature 25.0 270 > th dose independent rect. 14 4
365 266.77 humidity 90.0 30 < th dose dependent rect. 16 8
366 266.80 radiation 20.0 30 < th dose independent rect. 16 3
371 266.87 wind 9.0 30 < th dose independent rect. 19 21
377 266.92 temperature 10.0 30 > th dose independent rect. 16 3
379 266.92 atmosphere 1010.0 30 < th dose independent rect. 16 3
383 266.92 temperature 10.0 30 > th dose independent rect. 19 21
407 267.39 wind 9.0 30 < th dose independent rect. 16 3
411 267.46 humidity 70.0 270 > th dose independent sin 14 NA
444 267.67 temperature 25.0 10 > th dose independent rect. 16 5
449 267.77 precipitation 0.1 30 < th dose independent rect. 19 21
450 267.77 precipitation 0.1 30 < th dose dependent rect. 19 21
452 267.82 atmosphere 1000.0 270 > th dose independent rect. 15 2
471 268.02 atmosphere 995.0 30 > th dose independent rect. 19 21
485 268.22 radiation 1.0 270 > th dose dependent sin 13 NA
495 268.26 atmosphere 1005.0 10 > th dose independent rect. 16 5
496 268.26 humidity 50.0 270 > th dose independent rect. 17 22
499 268.31 humidity 50.0 30 > th dose independent rect. 16 3
585 269.48 radiation 40.0 10 < th dose dependent rect. 16 3
605 269.77 radiation 40.0 270 < th dose independent rect. 15 2
623 269.94 precipitation 0.1 270 < th dose independent rect. 15 2
624 269.94 precipitation 0.1 270 < th dose dependent rect. 15 2
640 270.10 wind 9.0 270 < th dose independent rect. 17 22
654 270.24 temperature 10.0 10 > th dose dependent rect. 21 19
665 270.37 humidity 50.0 10 > th dose independent rect. 21 19
690 270.53 temperature 10.0 270 > th dose independent rect. 15 2
692 270.53 atmosphere 1010.0 270 < th dose independent rect. 15 2
695 270.53 temperature 10.0 270 > th dose independent rect. 17 22
841 271.58 wind 1.0 30 > th dose independent rect. 19 21
846 271.62 wind 9.0 270 < th dose independent rect. 15 2
874 271.75 temperature 15.0 10 > th dose independent rect. 21 19
888 271.89 humidity 70.0 270 < th dose independent sin 14 NA
936 272.26 wind 9.0 10 < th dose independent rect. 21 19