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Os11g0137100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to U3 small nucleolar ribonucleoprotein protein MPP10 (M phase phosphoprotein 10).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.84 (0.0228) R2 : 0.786
β1 : 1.11 (0.0835) R2dD : 0.0863 R2D : 0.0669
β2 : 2.21 (0.0565) R2dC : 0.718 R2C : 0.702
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.135 (0.0487) R2dN8 : 0.00486 R2N8 : -0.0057
σ : 0.429
deviance : 83.75
__
_____
C
peak time of C : 14.9
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
72 0.399 8.86 1.1 1.75 -0.759 0.784 0.66 0.124 16 24.98 10 -- --
73.58 0.4 8.85 1.08 1.76 -0.761 0.367 -- 0.122 16 28.12 9 -- --
73.35 0.399 8.85 1.09 1.77 -0.754 -- 0.382 0.122 15.9 27.55 9 -- --
73.95 0.401 8.85 1.08 1.78 -0.729 -- -- 0.124 15.9 28.14 9 -- --
87.95 0.437 8.85 0.98 -- -1.91 -- 0.0718 0.0578 -- 2.71 385 -- --
83.66 0.429 8.84 1.11 2.21 -- 0.163 -- 0.134 14.9 -- -- -- --
83.75 0.429 8.84 1.11 2.21 -- -- -- 0.135 14.9 -- -- -- --
87.93 0.437 8.85 0.983 -- -1.92 -- -- 0.0545 -- 2.709 383 -- --
104.76 0.477 8.88 -- 1.77 -0.795 -- -- 0.00369 15.8 36.48 9 -- --
364.58 0.892 8.85 1.02 -- -- -- -- 0.0784 -- -- -- -- --
116.31 0.504 8.87 -- 2.19 -- -- -- 0.0115 14.9 -- -- -- --
112.17 0.493 8.87 -- -- -1.94 -- -- -0.036 -- 0.887 397 -- --
391.88 0.924 8.87 -- -- -- -- -- -0.0345 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 64.64 precipitation 0.1 90 < th dose independent rect. 8 19
2 64.64 precipitation 0.1 90 < th dose dependent rect. 8 19
3 64.89 wind 5.0 90 < th dose independent rect. 3 5
4 64.98 wind 9.0 90 < th dose independent rect. 8 19
7 65.19 temperature 10.0 90 > th dose independent rect. 3 5
9 65.19 temperature 30.0 90 < th dose independent rect. 3 5
10 65.19 humidity 50.0 90 > th dose independent rect. 3 5
12 65.19 atmosphere 995.0 90 > th dose independent rect. 3 5
13 65.19 atmosphere 1015.0 90 < th dose independent rect. 3 5
14 65.19 radiation 40.0 90 < th dose independent rect. 3 5
15 65.19 temperature 10.0 90 > th dose independent rect. 8 19
18 65.30 radiation 40.0 90 < th dose dependent rect. 3 6
19 65.31 precipitation 0.1 90 < th dose independent rect. 3 5
20 65.31 precipitation 0.1 90 < th dose dependent rect. 3 5
21 65.35 wind 9.0 270 < th dose independent rect. 5 22
23 65.38 wind 5.0 270 < th dose independent rect. 3 2
24 65.38 radiation 20.0 270 < th dose dependent rect. 1 7
25 65.47 atmosphere 1010.0 270 < th dose independent rect. 13 17
26 65.50 radiation 10.0 270 < th dose dependent rect. 1 13
29 65.59 radiation 40.0 90 < th dose dependent rect. 3 8
41 65.75 radiation 1.0 270 < th dose dependent rect. 3 2
43 65.79 radiation 10.0 270 < th dose independent rect. 1 7
45 65.80 temperature 10.0 270 > th dose independent rect. 3 2
47 65.80 temperature 30.0 270 < th dose independent rect. 3 2
48 65.80 humidity 50.0 270 > th dose independent rect. 3 2
51 65.80 atmosphere 995.0 270 > th dose independent rect. 3 2
52 65.80 atmosphere 1010.0 270 < th dose independent rect. 3 2
54 65.80 radiation 20.0 270 < th dose independent rect. 3 2
57 65.80 temperature 10.0 270 > th dose independent rect. 5 22
58 65.80 radiation 20.0 270 < th dose dependent rect. 3 2
61 65.80 temperature 10.0 90 > th dose dependent rect. 3 5
63 65.82 radiation 1.0 270 < th dose independent rect. 3 2
67 65.85 radiation 10.0 270 < th dose dependent rect. 1 16
74 65.94 wind 1.0 270 > th dose independent rect. 3 2
84 66.06 precipitation 0.1 270 < th dose independent rect. 3 2
86 66.06 precipitation 0.1 270 < th dose dependent rect. 3 2
91 66.11 temperature 10.0 270 > th dose dependent rect. 3 2
93 66.13 wind 5.0 270 < th dose independent rect. 1 6
94 66.13 wind 9.0 10 < th dose independent rect. 9 18
108 66.26 atmosphere 1010.0 270 < th dose independent rect. 11 10
109 66.31 wind 9.0 90 < th dose dependent rect. 3 5
111 66.34 wind 7.0 10 < th dose independent rect. 3 6
114 66.39 temperature 10.0 270 > th dose dependent rect. 1 6
116 66.40 temperature 10.0 10 > th dose independent rect. 3 6
118 66.40 temperature 30.0 10 < th dose independent rect. 3 6
119 66.40 humidity 50.0 10 > th dose independent rect. 3 6
121 66.40 atmosphere 995.0 10 > th dose independent rect. 3 6
122 66.40 atmosphere 1015.0 10 < th dose independent rect. 3 6
124 66.40 temperature 10.0 10 > th dose independent rect. 9 18
128 66.43 temperature 15.0 270 > th dose independent rect. 13 17
130 66.44 precipitation 0.1 270 < th dose independent rect. 5 22
131 66.44 precipitation 0.1 270 < th dose dependent rect. 5 22
133 66.45 radiation 40.0 10 < th dose independent rect. 3 6
137 66.46 radiation 40.0 90 < th dose dependent rect. 3 14
168 66.54 radiation 30.0 90 < th dose dependent rect. 3 12
186 66.64 humidity 70.0 270 > th dose independent rect. 1 6
208 66.71 temperature 10.0 270 > th dose independent rect. 1 6
210 66.71 temperature 30.0 270 < th dose independent rect. 1 6
211 66.71 humidity 50.0 270 > th dose independent rect. 1 6
213 66.71 atmosphere 995.0 270 > th dose independent rect. 1 6
214 66.71 atmosphere 1015.0 270 < th dose independent rect. 1 6
223 66.74 atmosphere 995.0 270 > th dose dependent rect. 19 6
226 66.75 radiation 20.0 90 < th dose independent rect. 3 8
229 66.76 atmosphere 995.0 90 > th dose dependent rect. 19 8
233 66.80 precipitation 0.1 270 < th dose independent rect. 1 6
234 66.80 precipitation 0.1 270 < th dose dependent rect. 1 6
245 66.83 radiation 1.0 270 < th dose independent rect. 1 17
246 66.83 humidity 50.0 90 > th dose dependent rect. 3 5
248 66.84 wind 9.0 270 < th dose dependent rect. 3 2
274 66.90 radiation 10.0 270 < th dose dependent sin 5 NA
277 66.91 radiation 1.0 270 < th dose dependent rect. 3 14
281 66.93 humidity 50.0 90 > th dose dependent rect. 3 16
282 66.94 radiation 1.0 270 > th dose independent sin 3 NA
285 66.96 wind 9.0 10 < th dose dependent rect. 3 6
313 67.11 radiation 1.0 270 < th dose independent sin 3 NA
315 67.12 radiation 1.0 270 < th dose dependent sin 3 NA
321 67.15 humidity 50.0 270 > th dose dependent rect. 3 2
331 67.22 atmosphere 995.0 90 > th dose independent rect. 8 19
339 67.26 radiation 40.0 90 < th dose dependent rect. 13 19
341 67.28 temperature 15.0 270 > th dose independent rect. 11 10
386 67.46 radiation 40.0 90 < th dose dependent rect. 3 16
387 67.48 wind 1.0 270 > th dose independent rect. 1 6
388 67.48 radiation 1.0 270 < th dose independent rect. 1 13
393 67.49 radiation 40.0 270 < th dose independent rect. 13 17
513 67.65 wind 9.0 270 < th dose dependent rect. 1 5
532 67.69 humidity 50.0 90 > th dose dependent rect. 3 14
565 67.76 radiation 40.0 10 < th dose dependent rect. 3 19
616 67.87 radiation 40.0 10 < th dose dependent rect. 12 21
617 67.88 wind 9.0 1440 < th dose independent rect. 4 5
618 67.88 temperature 10.0 1440 > th dose independent rect. 4 5
621 67.88 humidity 50.0 1440 > th dose independent rect. 4 5
623 67.88 atmosphere 995.0 1440 > th dose independent rect. 4 5
624 67.88 atmosphere 1015.0 1440 < th dose independent rect. 4 5
625 67.88 temperature 10.0 1440 > th dose independent rect. 9 19
648 67.95 wind 1.0 90 > th dose independent rect. 3 5
650 67.95 wind 9.0 270 < th dose independent rect. 20 15
656 67.97 radiation 40.0 90 < th dose dependent rect. 15 17
683 68.04 precipitation 0.1 270 < th dose independent rect. 6 8
686 68.04 temperature 10.0 270 > th dose independent rect. 20 15
687 68.04 atmosphere 995.0 270 > th dose independent rect. 20 15
689 68.04 precipitation 0.1 270 < th dose dependent rect. 6 8
693 68.05 atmosphere 995.0 90 > th dose dependent rect. 8 19
701 68.08 humidity 70.0 90 > th dose independent rect. 3 8
704 68.08 radiation 40.0 90 < th dose dependent rect. 3 19
712 68.13 wind 9.0 270 < th dose independent rect. 6 8
719 68.15 atmosphere 1015.0 270 < th dose dependent rect. 3 2
730 68.17 wind 1.0 270 > th dose independent rect. 11 9
747 68.18 precipitation 0.1 270 < th dose independent rect. 20 15
750 68.18 precipitation 0.1 270 < th dose dependent rect. 20 15
753 68.19 wind 7.0 270 < th dose independent rect. 17 8
754 68.19 atmosphere 995.0 10 > th dose independent rect. 9 18
755 68.20 temperature 10.0 270 > th dose independent rect. 6 8
756 68.20 atmosphere 995.0 270 > th dose independent rect. 6 8
757 68.20 atmosphere 1015.0 270 < th dose independent rect. 6 8
769 68.22 humidity 50.0 270 > th dose independent rect. 20 15
772 68.22 atmosphere 995.0 10 > th dose dependent rect. 22 5
791 68.25 radiation 20.0 90 < th dose independent rect. 3 12
794 68.26 radiation 20.0 90 < th dose independent rect. 3 14
807 68.28 humidity 50.0 10 > th dose dependent rect. 3 17
815 68.30 atmosphere 1015.0 90 < th dose dependent rect. 3 5
868 68.42 humidity 60.0 90 > th dose dependent rect. 3 12
878 68.45 radiation 40.0 90 < th dose dependent sin 4 NA
910 68.52 radiation 40.0 270 < th dose dependent rect. 15 15
915 68.53 humidity 50.0 270 > th dose independent rect. 14 16
926 68.54 radiation 40.0 90 < th dose independent rect. 3 16
929 68.54 wind 9.0 90 < th dose dependent rect. 8 19
949 68.59 humidity 60.0 90 > th dose dependent rect. 3 8
967 68.63 humidity 50.0 270 > th dose dependent rect. 1 6
968 68.64 radiation 1.0 270 > th dose independent rect. 6 7
969 68.64 precipitation 0.1 270 < th dose independent rect. 11 9
976 68.64 precipitation 0.1 270 < th dose dependent rect. 11 9