Os11g0136600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Calcium-dependent protein kinase (Fragment).
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Os11g0136600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Calcium-dependent protein kinase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 239.23 | 0.727 | 3.38 | 0.506 | 0.43 | -0.273 | -0.521 | -2.11 | 0.38 | 8.67 | 1004 | 1365 | -- | -- |
| 245.5 | 0.73 | 3.37 | 0.611 | 0.449 | -0.52 | -0.461 | -- | 0.375 | 8.67 | 1002 | 1293 | -- | -- |
| 240.04 | 0.722 | 3.38 | 0.488 | 0.438 | -0.272 | -- | -2.07 | 0.379 | 8.34 | 1004 | 1365 | -- | -- |
| 245.4 | 0.73 | 3.37 | 0.597 | 0.457 | -0.57 | -- | -- | 0.374 | 8.32 | 1001 | 1230 | -- | -- |
| 250.59 | 0.737 | 3.39 | 0.499 | -- | -0.275 | -- | -2.11 | 0.384 | -- | 1004 | 1340 | -- | -- |
| 253.03 | 0.746 | 3.36 | 0.533 | 0.452 | -- | -0.39 | -- | 0.423 | 8.54 | -- | -- | -- | -- |
| 253.49 | 0.746 | 3.36 | 0.52 | 0.455 | -- | -- | -- | 0.423 | 8.35 | -- | -- | -- | -- |
| 256.55 | 0.746 | 3.38 | 0.625 | -- | -0.602 | -- | -- | 0.384 | -- | 1001 | 1217 | -- | -- |
| 254.91 | 0.744 | 3.38 | -- | 0.453 | -0.492 | -- | -- | 0.321 | 8.24 | 1001 | 1313 | -- | -- |
| 265.01 | 0.761 | 3.37 | 0.523 | -- | -- | -- | -- | 0.428 | -- | -- | -- | -- | -- |
| 260.62 | 0.755 | 3.37 | -- | 0.458 | -- | -- | -- | 0.365 | 8.26 | -- | -- | -- | -- |
| 266.26 | 0.76 | 3.4 | -- | -- | -0.456 | -- | -- | 0.318 | -- | 1002 | 1249 | -- | -- |
| 272.22 | 0.77 | 3.38 | -- | -- | -- | -- | -- | 0.37 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 235.87 | atmosphere | 1005 | 1440 | < th | dose independent | rect. | 2 | 8 |
| 2 | 235.94 | atmosphere | 1005 | 1440 | < th | dose independent | rect. | 24 | 10 |
| 3 | 235.96 | atmosphere | 1005 | 1440 | > th | dose independent | rect. | 2 | 8 |
| 6 | 236.00 | atmosphere | 1005 | 1440 | > th | dose independent | rect. | 24 | 10 |
| 26 | 236.50 | atmosphere | 1005 | 1440 | < th | dose independent | rect. | 2 | 4 |
| 29 | 236.55 | atmosphere | 1005 | 1440 | > th | dose independent | rect. | 2 | 4 |
| 57 | 236.84 | atmosphere | 1005 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 61 | 236.92 | atmosphere | 1005 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 105 | 237.35 | atmosphere | 1005 | 1440 | > th | dose independent | sin | 7 | NA |
| 114 | 237.46 | atmosphere | 1005 | 1440 | > th | dose independent | rect. | 7 | 2 |
| 117 | 237.47 | atmosphere | 1005 | 1440 | < th | dose independent | sin | 7 | NA |
| 120 | 237.51 | atmosphere | 1005 | 1440 | < th | dose independent | rect. | 7 | 2 |
| 155 | 237.88 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 3 | 6 |
| 254 | 238.86 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 322 | 239.41 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 2 | 13 |
| 398 | 239.95 | atmosphere | 1005 | 1440 | < th | dose dependent | rect. | 2 | 3 |
| 419 | 240.09 | atmosphere | 1005 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 439 | 240.15 | atmosphere | 1005 | 1440 | < th | dose dependent | rect. | 1 | 9 |
| 443 | 240.16 | wind | 7 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 515 | 240.45 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 8 | 1 |
| 616 | 240.76 | atmosphere | 1005 | 1440 | < th | dose dependent | rect. | 9 | 1 |
| 620 | 240.78 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 1 | 14 |
| 627 | 240.79 | atmosphere | 1005 | 1440 | < th | dose dependent | sin | 7 | NA |
| 639 | 240.83 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 5 | 4 |
| 643 | 240.84 | atmosphere | 1005 | 1440 | > th | dose independent | rect. | 24 | 22 |
| 685 | 240.97 | atmosphere | 1005 | 1440 | < th | dose independent | no | NA | NA |
| 697 | 241.00 | atmosphere | 1005 | 1440 | > th | dose independent | no | NA | NA |
| 703 | 241.01 | wind | 1 | 43200 | < th | dose dependent | rect. | 16 | 6 |
| 738 | 241.11 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 5 | 5 |
| 742 | 241.11 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 770 | 241.19 | atmosphere | 1005 | 270 | < th | dose independent | sin | 4 | NA |
| 776 | 241.20 | atmosphere | 1005 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 795 | 241.24 | atmosphere | 1005 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 800 | 241.25 | atmosphere | 1005 | 1440 | > th | dose independent | rect. | 2 | 23 |
| 804 | 241.25 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 24 | 9 |
| 830 | 241.31 | atmosphere | 1005 | 1440 | > th | dose independent | rect. | 7 | 23 |
| 856 | 241.37 | atmosphere | 1005 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 866 | 241.39 | atmosphere | 1005 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 913 | 241.49 | atmosphere | 1005 | 270 | > th | dose independent | sin | 5 | NA |
| 964 | 241.62 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 3 | 8 |