Os11g0136300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF6, transmembrane domain containing protein.
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Os11g0136300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF6, transmembrane domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 391.09 | 0.929 | 7.4 | -1.31 | 2.45 | -3.21 | 0.394 | -2.12 | -0.839 | 6.43 | 6.227 | 457 | -- | -- |
| 390.59 | 0.92 | 7.38 | -1.34 | 2.49 | -2.62 | 0.187 | -- | -0.84 | 6.41 | 6 | 461 | -- | -- |
| 391.43 | 0.921 | 7.39 | -1.31 | 2.45 | -3.2 | -- | -1.83 | -0.836 | 6.41 | 6.248 | 456 | -- | -- |
| 390.66 | 0.921 | 7.38 | -1.34 | 2.49 | -2.64 | -- | -- | -0.841 | 6.41 | 6 | 461 | -- | -- |
| 636.12 | 1.17 | 7.4 | -1.54 | -- | -2.45 | -- | -1.76 | -0.768 | -- | 8.099 | 975 | -- | -- |
| 447.73 | 0.992 | 7.4 | -1.84 | 2 | -- | 1.3 | -- | -0.89 | 6.33 | -- | -- | -- | -- |
| 451.76 | 0.995 | 7.4 | -1.83 | 2 | -- | -- | -- | -0.895 | 6.23 | -- | -- | -- | -- |
| 632.95 | 1.17 | 7.41 | -1.45 | -- | -1.95 | -- | -- | -0.729 | -- | 7.9 | 1050 | -- | -- |
| 433.99 | 0.97 | 7.34 | -- | 2.62 | -3.21 | -- | -- | -0.699 | 6.48 | 5.849 | 461 | -- | -- |
| 660.26 | 1.2 | 7.44 | -1.77 | -- | -- | -- | -- | -0.851 | -- | -- | -- | -- | -- |
| 539.56 | 1.09 | 7.35 | -- | 1.98 | -- | -- | -- | -0.692 | 6.28 | -- | -- | -- | -- |
| 680.67 | 1.22 | 7.38 | -- | -- | -2.69 | -- | -- | -0.63 | -- | 7.029 | 1147 | -- | -- |
| 742.94 | 1.27 | 7.39 | -- | -- | -- | -- | -- | -0.655 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 396.70 | wind | 5 | 270 | > th | dose dependent | rect. | 13 | 22 |
| 2 | 396.73 | wind | 1 | 4320 | < th | dose dependent | rect. | 22 | 1 |
| 3 | 397.15 | humidity | 80 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 5 | 397.66 | wind | 5 | 270 | > th | dose dependent | rect. | 9 | 21 |
| 11 | 397.78 | wind | 7 | 270 | > th | dose independent | rect. | 13 | 22 |
| 19 | 398.19 | wind | 1 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 28 | 398.79 | wind | 7 | 270 | < th | dose independent | sin | 18 | NA |
| 43 | 399.67 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 7 |
| 44 | 399.71 | wind | 7 | 720 | < th | dose independent | rect. | 7 | 18 |
| 45 | 399.74 | wind | 5 | 270 | > th | dose dependent | no | NA | NA |
| 47 | 399.75 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 8 |
| 49 | 399.81 | wind | 3 | 720 | > th | dose dependent | rect. | 9 | 14 |
| 51 | 399.85 | wind | 7 | 720 | < th | dose independent | rect. | 13 | 22 |
| 61 | 400.14 | wind | 5 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 70 | 400.32 | wind | 5 | 270 | > th | dose dependent | rect. | 2 | 23 |
| 72 | 400.38 | wind | 5 | 270 | > th | dose dependent | rect. | 24 | 23 |
| 77 | 400.51 | wind | 5 | 270 | > th | dose dependent | sin | 17 | NA |
| 80 | 400.62 | wind | 7 | 720 | < th | dose independent | rect. | 21 | 22 |
| 81 | 400.62 | wind | 3 | 720 | > th | dose dependent | rect. | 9 | 11 |
| 82 | 400.66 | wind | 5 | 720 | < th | dose independent | rect. | 7 | 9 |
| 91 | 400.93 | wind | 3 | 720 | > th | dose dependent | rect. | 9 | 9 |
| 92 | 400.95 | wind | 5 | 720 | < th | dose independent | rect. | 5 | 14 |
| 93 | 400.96 | wind | 7 | 1440 | < th | dose independent | rect. | 14 | 2 |
| 99 | 401.04 | wind | 7 | 1440 | > th | dose independent | rect. | 14 | 2 |
| 104 | 401.14 | wind | 7 | 1440 | > th | dose dependent | rect. | 14 | 2 |
| 105 | 401.15 | wind | 7 | 720 | < th | dose independent | rect. | 5 | 20 |
| 132 | 401.55 | wind | 7 | 270 | < th | dose independent | sin | 21 | NA |
| 133 | 401.56 | wind | 3 | 720 | > th | dose dependent | sin | 21 | NA |
| 136 | 401.62 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 4 |
| 152 | 401.93 | wind | 7 | 720 | < th | dose independent | rect. | 23 | 18 |
| 153 | 401.94 | wind | 5 | 720 | > th | dose independent | rect. | 8 | 15 |
| 165 | 402.04 | wind | 5 | 720 | > th | dose independent | rect. | 9 | 10 |
| 172 | 402.11 | wind | 5 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 186 | 402.25 | wind | 5 | 270 | > th | dose independent | rect. | 10 | 19 |
| 189 | 402.27 | humidity | 80 | 14400 | < th | dose independent | rect. | 19 | 3 |
| 198 | 402.35 | wind | 7 | 270 | > th | dose independent | sin | 17 | NA |
| 206 | 402.39 | wind | 5 | 720 | > th | dose independent | sin | 22 | NA |
| 220 | 402.46 | humidity | 80 | 14400 | > th | dose independent | rect. | 20 | 2 |
| 238 | 402.59 | wind | 5 | 270 | > th | dose dependent | rect. | 13 | 17 |
| 272 | 402.72 | humidity | 80 | 14400 | > th | dose independent | rect. | 19 | 4 |
| 286 | 402.79 | wind | 5 | 720 | < th | dose independent | sin | 0 | NA |
| 348 | 403.14 | wind | 7 | 270 | < th | dose independent | no | NA | NA |
| 374 | 403.23 | wind | 5 | 720 | > th | dose dependent | rect. | 3 | 15 |
| 415 | 403.46 | wind | 7 | 270 | > th | dose independent | rect. | 13 | 16 |
| 433 | 403.54 | wind | 7 | 270 | > th | dose independent | no | NA | NA |
| 445 | 403.57 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 4 |
| 463 | 403.65 | wind | 7 | 270 | > th | dose independent | rect. | 24 | 23 |
| 478 | 403.72 | wind | 7 | 720 | > th | dose independent | rect. | 21 | 21 |
| 498 | 403.80 | wind | 1 | 43200 | < th | dose independent | rect. | 6 | 4 |
| 521 | 403.88 | wind | 7 | 270 | > th | dose independent | rect. | 19 | 23 |
| 574 | 404.13 | wind | 7 | 720 | < th | dose independent | rect. | 13 | 6 |
| 698 | 404.66 | wind | 7 | 720 | < th | dose independent | rect. | 13 | 13 |
| 744 | 404.83 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 13 |
| 745 | 404.83 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 15 |
| 769 | 404.93 | wind | 7 | 720 | < th | dose independent | rect. | 14 | 11 |
| 819 | 405.05 | wind | 5 | 720 | > th | dose independent | rect. | 10 | 5 |
| 853 | 405.16 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 13 |
| 988 | 405.57 | wind | 7 | 1440 | < th | dose independent | rect. | 11 | 7 |