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Os11g0135000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Major facilitator superfamily antiporter.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.56 (0.0415) R2 : 0.845
β1 : 1.13 (0.159) R2dD : 0.02 R2D : -0.0518
β2 : 5.06 (0.105) R2dC : 0.811 R2C : 0.744
β3 : 1.21 (0.14) R2dE : 0.0266 R2E : -0.0643
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -3.1 (0.404) R2dD*E : 0.0223 R2D*E : -0.0443
γ1 : 1.11 (0.0898) R2dN8 : 0.073 R2N8 : 0.0236
σ : 0.766
deviance : 270.21
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_____
C
peak time of C : 8.16
E
wheather : temperature
threshold : 20.2
memory length : 18
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 4.58
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
267.81 0.769 7.55 1.18 5.07 1.2 -0.974 -3.24 1.11 8.16 20.2 14 4.93 --
300.87 0.814 7.59 0.877 5.05 1.46 -0.272 -- 1.01 8.11 19.27 8 5.14 --
270.21 0.766 7.56 1.13 5.06 1.21 -- -3.1 1.11 8.16 20.2 18 4.58 --
291.51 0.795 7.6 1.03 5 1.96 -- -- 1.01 8.09 19.5 240 6.67 --
1474.78 1.79 7.59 1.89 -- 2.62 -- -2.77 1.48 -- 20.65 426 2.09 --
346.95 0.873 7.63 0.584 4.95 -- 0.00817 -- 0.854 7.89 -- -- -- --
346.95 0.872 7.63 0.585 4.95 -- -- -- 0.854 7.89 -- -- -- --
346.95 0.868 7.77 0.585 -- 4.95 -- -- 0.854 -- 137 250 0.192 --
314.32 0.826 7.62 -- 4.98 1.59 -- -- 0.92 8.08 19.41 226 7.07 --
1679.25 1.91 7.76 0.639 -- -- -- -- 0.92 -- -- -- -- --
355.96 0.883 7.65 -- 4.95 -- -- -- 0.789 7.88 -- -- -- --
355.96 0.879 7.79 -- -- 4.95 -- -- 0.789 -- 126.5 226 0.000578 --
1690.02 1.92 7.77 -- -- -- -- -- 0.849 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 270.96 temperature 20.0 10 < th dose independent rect. 17 13
4 271.69 temperature 20.0 10 < th dose independent sin 11 NA
8 271.89 temperature 20.0 90 < th dose independent rect. 17 14
22 272.92 temperature 20.0 270 < th dose independent sin 13 NA
27 273.09 temperature 20.0 90 < th dose independent sin 11 NA
139 277.90 temperature 20.0 10 < th dose independent rect. 14 16
189 279.86 temperature 20.0 270 < th dose independent rect. 21 8
253 281.87 radiation 1.0 1440 > th dose independent rect. 13 2
280 282.78 radiation 1.0 1440 < th dose independent rect. 13 2
281 282.78 radiation 1.0 1440 < th dose dependent rect. 13 2
285 282.86 radiation 1.0 1440 > th dose independent rect. 11 4
289 283.22 radiation 1.0 1440 < th dose independent rect. 11 4
290 283.22 radiation 1.0 1440 < th dose dependent rect. 11 4
312 283.95 temperature 20.0 10 > th dose independent sin 11 NA
317 284.26 temperature 20.0 90 < th dose independent rect. 23 6
339 285.15 radiation 1.0 1440 < th dose independent rect. 11 1
340 285.15 radiation 1.0 1440 < th dose dependent rect. 11 1
341 285.21 temperature 20.0 270 > th dose independent rect. 15 11
361 285.64 temperature 20.0 10 > th dose independent rect. 15 13
375 285.87 temperature 20.0 90 > th dose independent sin 11 NA
497 289.66 radiation 1.0 1440 < th dose independent rect. 9 1
498 289.66 radiation 1.0 1440 < th dose dependent rect. 9 1
507 290.11 humidity 50.0 43200 < th dose dependent rect. 6 3
516 290.23 temperature 20.0 10 > th dose independent rect. 15 15
522 290.39 temperature 20.0 270 < th dose independent rect. 23 2
567 291.48 temperature 25.0 270 < th dose dependent rect. 16 13
607 292.62 humidity 50.0 43200 < th dose independent rect. 5 3
627 293.04 temperature 25.0 270 < th dose dependent sin 14 NA
657 293.56 temperature 25.0 90 < th dose dependent rect. 17 16
669 293.88 humidity 90.0 14400 < th dose dependent rect. 22 3
689 294.23 radiation 20.0 1440 < th dose independent rect. 12 1
698 294.39 temperature 20.0 270 > th dose independent rect. 12 23
716 294.72 temperature 20.0 270 > th dose independent rect. 11 16
762 295.44 temperature 25.0 10 < th dose dependent sin 12 NA
766 295.55 temperature 20.0 270 > th dose independent rect. 10 20
772 295.63 temperature 25.0 10 < th dose dependent rect. 17 11
773 295.66 radiation 1.0 1440 > th dose independent rect. 4 1
783 295.66 radiation 1.0 1440 > th dose dependent rect. 4 1
819 296.07 humidity 50.0 43200 > th dose independent rect. 22 10
823 296.10 temperature 20.0 90 > th dose independent rect. 7 23
831 296.17 temperature 10.0 43200 > th dose independent rect. 8 5
850 296.36 temperature 25.0 10 < th dose dependent rect. 18 16
867 296.54 temperature 25.0 10 < th dose dependent rect. 18 14
878 296.65 radiation 1.0 1440 > th dose independent rect. 9 1
880 296.68 humidity 50.0 43200 > th dose independent rect. 6 2
888 296.74 temperature 20.0 10 > th dose independent rect. 15 23
898 296.87 temperature 20.0 270 > th dose independent rect. 17 16
910 296.93 temperature 20.0 270 > th dose independent rect. 5 23
917 296.99 radiation 30.0 4320 < th dose independent rect. 16 3
922 297.00 temperature 10.0 43200 < th dose independent rect. 4 17
923 297.02 temperature 10.0 43200 < th dose dependent rect. 4 2
928 297.04 temperature 10.0 43200 < th dose dependent rect. 4 17
934 297.07 humidity 50.0 43200 > th dose independent rect. 1 7
936 297.07 radiation 20.0 1440 < th dose dependent rect. 11 2
941 297.13 temperature 10.0 43200 < th dose dependent rect. 4 7
971 297.27 temperature 10.0 43200 < th dose dependent rect. 2 20
975 297.29 precipitation 0.1 270 > th dose independent rect. 2 2
982 297.30 precipitation 0.1 270 > th dose dependent rect. 2 2
990 297.34 temperature 10.0 43200 > th dose independent rect. 20 9
993 297.35 temperature 10.0 43200 < th dose dependent rect. 2 8