Os11g0134300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Serine/threonine kinase.
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Os11g0134300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Serine/threonine kinase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 110.23 | 0.493 | 12.7 | -2.64 | 0.949 | 1.07 | 0.615 | -4.06 | -0.361 | 8.28 | 21.3 | 1396 | -- | -- |
| 120.49 | 0.511 | 12.6 | -1.8 | 0.978 | 1.3 | 0.589 | -- | -0.186 | 8.19 | 12.9 | 6918 | -- | -- |
| 109.97 | 0.488 | 12.7 | -2.81 | 1.08 | 1.17 | -- | -4.93 | -0.405 | 8.21 | 21.47 | 2105 | -- | -- |
| 121.67 | 0.514 | 12.6 | -1.71 | 0.938 | 1.2 | -- | -- | -0.133 | 8.26 | 12.57 | 6995 | -- | -- |
| 164.58 | 0.598 | 12.7 | -2.66 | -- | 0.975 | -- | -3.97 | -0.334 | -- | 21.05 | 2833 | -- | -- |
| 144.78 | 0.564 | 12.5 | -1.11 | 0.943 | -- | 0.696 | -- | 0.174 | 8.03 | -- | -- | -- | -- |
| 146.22 | 0.566 | 12.5 | -1.09 | 0.942 | -- | -- | -- | 0.173 | 8.04 | -- | -- | -- | -- |
| 170.08 | 0.607 | 12.6 | -1.7 | -- | 1.2 | -- | -- | -0.134 | -- | 12.41 | 7195 | -- | -- |
| 169.76 | 0.61 | 12.5 | -- | 0.978 | 0.866 | -- | -- | 0.192 | 7.16 | 12.57 | 6995 | -- | -- |
| 194.83 | 0.652 | 12.5 | -1.08 | -- | -- | -- | -- | 0.185 | -- | -- | -- | -- | -- |
| 177.72 | 0.624 | 12.5 | -- | 0.936 | -- | -- | -- | 0.295 | 8.12 | -- | -- | -- | -- |
| 175.15 | 0.616 | 12.6 | -- | -- | -0.862 | -- | -- | 0.103 | -- | 35.46 | 47520 | -- | -- |
| 225.84 | 0.701 | 12.5 | -- | -- | -- | -- | -- | 0.305 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 100.90 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 3 |
| 2 | 101.03 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 3 |
| 16 | 101.93 | wind | 3 | 43200 | > th | dose dependent | rect. | 13 | 3 |
| 18 | 102.15 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 8 |
| 21 | 102.25 | wind | 5 | 43200 | < th | dose independent | rect. | 12 | 9 |
| 64 | 102.91 | wind | 9 | 43200 | < th | dose dependent | rect. | 12 | 3 |
| 70 | 103.02 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 5 |
| 107 | 103.51 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 10 |
| 159 | 104.04 | wind | 5 | 43200 | < th | dose independent | sin | 19 | NA |
| 176 | 104.19 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 211 | 104.52 | wind | 5 | 43200 | > th | dose independent | sin | 19 | NA |
| 233 | 104.69 | wind | 3 | 43200 | > th | dose dependent | sin | 19 | NA |
| 250 | 104.91 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 11 |
| 297 | 105.26 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 327 | 105.42 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 367 | 105.62 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 397 | 105.78 | humidity | 80 | 43200 | < th | dose independent | rect. | 20 | 3 |
| 400 | 105.79 | wind | 9 | 43200 | < th | dose dependent | sin | 21 | NA |
| 429 | 105.95 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 431 | 105.96 | humidity | 80 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 445 | 106.05 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 452 | 106.07 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 453 | 106.07 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 476 | 106.14 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 589 | 106.75 | humidity | 80 | 43200 | > th | dose independent | rect. | 20 | 4 |
| 618 | 106.88 | wind | 3 | 43200 | < th | dose dependent | rect. | 9 | 2 |
| 622 | 106.90 | humidity | 80 | 43200 | < th | dose dependent | rect. | 20 | 14 |
| 632 | 106.97 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 735 | 107.47 | radiation | 20 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 738 | 107.48 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 768 | 107.64 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 772 | 107.66 | radiation | 40 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 781 | 107.69 | radiation | 20 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 782 | 107.70 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 2 |
| 789 | 107.71 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 7 |
| 790 | 107.71 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 9 |
| 800 | 107.74 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 811 | 107.79 | temperature | 20 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 834 | 107.87 | radiation | 40 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 915 | 108.08 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 940 | 108.13 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 946 | 108.14 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 980 | 108.22 | humidity | 70 | 43200 | < th | dose dependent | rect. | 10 | 2 |
| 989 | 108.25 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 11 | 1 |