FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0133300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Resistance protein candidate (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.9 (0.0205) R2 : 0.000454
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0196 (0.0431) R2dN8 : 0.000586 R2N8 : 0.000454
σ : 0.386
deviance : 68.36
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
64.32 0.377 2.9 0.163 0.551 0.532 1.81 1.46 0.0467 15.1 5.006 338 -- --
65.56 0.377 2.89 0.189 0.414 0.423 0.254 -- 0.0546 15.5 5.599 361 -- --
65.77 0.378 2.89 0.188 0.354 0.389 -- 0.0817 0.0641 15.6 7.069 361 -- --
65.61 0.377 2.89 0.21 0.52 0.516 -- -- 0.0586 15 5.216 335 -- --
66.73 0.38 2.89 0.186 -- 0.104 -- 0.181 0.0439 -- 26.2 255 -- --
66.6 0.383 2.9 0.198 0.0765 -- 0.405 -- 0.0408 20.7 -- -- -- --
66.95 0.383 2.9 0.182 0.0908 -- -- -- 0.0392 23.4 -- -- -- --
66.81 0.381 2.89 0.188 -- 0.119 -- -- 0.0474 -- 32.01 313 -- --
66.71 0.38 2.9 -- 0.457 0.467 -- -- 0.0355 15.1 6.39 340 -- --
67.47 0.384 2.89 0.184 -- -- -- -- 0.0401 -- -- -- -- --
67.82 0.385 2.9 -- 0.0928 -- -- -- 0.0189 23.5 -- -- -- --
67.63 0.383 2.9 -- -- 0.0925 -- -- 0.0204 -- 6.848 245 -- --
68.36 0.386 2.9 -- -- -- -- -- 0.0196 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 58.95 humidity 90.0 30 < th dose independent rect. 2 2
4 58.98 humidity 80.0 90 < th dose dependent rect. 2 3
8 58.99 humidity 80.0 90 < th dose dependent rect. 2 1
9 58.99 humidity 90.0 10 < th dose dependent rect. 3 1
49 60.89 atmosphere 1005.0 10 > th dose dependent rect. 3 1
58 62.26 temperature 20.0 10 < th dose dependent rect. 3 1
75 62.82 humidity 80.0 10 > th dose independent rect. 16 8
76 62.83 temperature 20.0 90 < th dose independent rect. 2 1
125 63.20 radiation 1.0 90 < th dose independent rect. 5 20
155 63.39 temperature 20.0 90 < th dose dependent rect. 20 1
156 63.39 temperature 20.0 10 < th dose dependent rect. 21 1
162 63.40 temperature 20.0 90 < th dose independent rect. 20 1
182 63.50 atmosphere 1005.0 10 > th dose independent rect. 2 2
188 63.51 humidity 80.0 90 > th dose independent rect. 9 15
189 63.51 radiation 1.0 90 < th dose dependent rect. 5 19
193 63.53 radiation 1.0 270 > th dose independent sin 22 NA
197 63.54 radiation 1.0 270 < th dose independent rect. 2 22
215 63.61 radiation 1.0 90 < th dose independent rect. 4 23
217 63.63 humidity 80.0 90 < th dose independent sin 17 NA
218 63.63 humidity 80.0 90 < th dose independent rect. 13 12
227 63.67 humidity 80.0 90 > th dose independent sin 18 NA
240 63.69 humidity 60.0 10 > th dose dependent rect. 17 7
242 63.70 humidity 90.0 270 < th dose independent rect. 9 10
252 63.72 humidity 70.0 90 > th dose dependent rect. 16 7
259 63.74 humidity 90.0 270 < th dose independent rect. 11 8
265 63.76 humidity 80.0 90 > th dose independent sin 16 NA
267 63.76 temperature 25.0 10 > th dose independent rect. 14 6
288 63.79 radiation 1.0 270 > th dose independent rect. 9 22
297 63.81 radiation 1.0 90 < th dose dependent rect. 4 23
310 63.84 radiation 1.0 270 < th dose independent sin 21 NA
311 63.84 temperature 25.0 10 > th dose independent rect. 12 8
317 63.85 temperature 30.0 270 < th dose independent rect. 15 8
318 63.85 atmosphere 1005.0 30 > th dose independent rect. 20 8
323 63.85 radiation 1.0 90 < th dose independent rect. 7 17
331 63.86 humidity 80.0 90 > th dose independent rect. 5 19
348 63.89 humidity 80.0 90 > th dose independent rect. 19 4
354 63.89 atmosphere 1000.0 270 > th dose dependent rect. 19 1
368 63.91 radiation 20.0 270 < th dose dependent rect. 14 9
369 63.92 radiation 1.0 270 < th dose independent sin 23 NA
371 63.92 atmosphere 1005.0 270 > th dose independent rect. 19 2
373 63.92 radiation 10.0 270 < th dose independent rect. 14 9
376 63.92 radiation 1.0 270 < th dose independent rect. 6 15
383 63.93 radiation 1.0 90 < th dose independent rect. 16 8
408 63.94 radiation 1.0 270 < th dose dependent rect. 5 16
412 63.95 humidity 80.0 10 < th dose independent rect. 14 12
413 63.95 humidity 80.0 10 < th dose independent rect. 14 14
431 63.97 atmosphere 1005.0 270 > th dose independent rect. 16 7
436 63.97 temperature 20.0 10 > th dose dependent rect. 14 6
450 63.99 atmosphere 1005.0 270 > th dose independent rect. 17 5
461 64.00 humidity 80.0 10 < th dose independent rect. 14 10
465 64.01 humidity 80.0 270 > th dose independent rect. 19 2
474 64.01 precipitation 0.1 90 < th dose independent rect. 23 23
477 64.01 radiation 1.0 30 < th dose dependent rect. 7 17
479 64.01 precipitation 0.1 90 < th dose dependent rect. 23 23
497 64.03 humidity 90.0 10 < th dose independent rect. 12 8
507 64.04 humidity 50.0 43200 > th dose independent rect. 4 2
518 64.04 humidity 70.0 270 > th dose dependent rect. 17 4
520 64.04 temperature 20.0 10 > th dose dependent rect. 14 8
539 64.06 humidity 80.0 10 > th dose independent sin 15 NA
557 64.06 temperature 30.0 90 < th dose dependent rect. 16 7
563 64.07 humidity 80.0 10 < th dose independent rect. 14 8
572 64.07 atmosphere 1000.0 30 > th dose dependent rect. 19 5
574 64.07 radiation 1.0 30 < th dose dependent rect. 11 13
592 64.08 radiation 10.0 270 < th dose dependent sin 20 NA
594 64.08 temperature 20.0 270 > th dose dependent rect. 12 7
599 64.08 radiation 1.0 30 < th dose dependent rect. 13 11
612 64.09 radiation 1.0 270 < th dose dependent sin 23 NA
618 64.09 radiation 1.0 30 < th dose dependent rect. 15 9
624 64.10 radiation 1.0 270 > th dose independent rect. 11 8
662 64.11 radiation 1.0 270 < th dose independent rect. 15 6
693 64.12 wind 1.0 10 > th dose independent rect. 5 19
694 64.12 temperature 30.0 90 < th dose independent rect. 4 21
704 64.13 atmosphere 1005.0 90 > th dose independent rect. 19 4
719 64.13 atmosphere 995.0 30 > th dose dependent rect. 19 9
769 64.16 temperature 20.0 270 > th dose independent rect. 16 7
782 64.16 radiation 1.0 270 < th dose dependent rect. 16 5
798 64.17 wind 5.0 30 < th dose independent rect. 20 8
835 64.18 temperature 30.0 90 < th dose independent rect. 4 15
838 64.18 humidity 80.0 90 > th dose independent rect. 5 22
931 64.22 radiation 10.0 4320 < th dose independent rect. 18 7
944 64.22 humidity 70.0 90 > th dose dependent rect. 19 4
948 64.22 radiation 40.0 1440 < th dose dependent rect. 18 7
949 64.22 wind 9.0 30 < th dose dependent rect. 20 8
959 64.23 wind 9.0 1440 < th dose independent rect. 1 5
960 64.23 temperature 10.0 1440 > th dose independent rect. 1 5
963 64.23 temperature 30.0 1440 < th dose independent rect. 1 5
967 64.23 humidity 50.0 1440 > th dose independent rect. 1 5
976 64.23 atmosphere 995.0 1440 > th dose independent rect. 1 5
977 64.23 radiation 20.0 1440 < th dose independent rect. 1 5
986 64.23 temperature 10.0 43200 > th dose independent rect. 13 7
990 64.23 radiation 1.0 270 > th dose independent rect. 9 10