Os11g0133200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os11g0133200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 129.88 | 0.535 | 5.52 | 2.73 | 1.68 | 0.426 | -0.862 | -1.52 | 0.0421 | 19.4 | 19.4 | 125 | -- | -- |
| 136.33 | 0.544 | 5.56 | 2.62 | 1.69 | 0.777 | -0.816 | -- | 0.0088 | 19.4 | 19.1 | 134 | -- | -- |
| 130.5 | 0.536 | 5.53 | 2.74 | 1.66 | 0.434 | -- | -1.54 | 0.0401 | 19.4 | 19.4 | 125 | -- | -- |
| 138.04 | 0.547 | 5.55 | 2.63 | 1.69 | 0.769 | -- | -- | 0.0102 | 19.3 | 19.09 | 120 | -- | -- |
| 275.95 | 0.778 | 5.48 | 2.75 | -- | 0.54 | -- | -1.6 | 0.028 | -- | 19.06 | 12 | -- | -- |
| 148.72 | 0.572 | 5.58 | 2.37 | 1.68 | -- | -1.01 | -- | -0.0905 | 19.7 | -- | -- | -- | -- |
| 151.54 | 0.576 | 5.58 | 2.39 | 1.68 | -- | -- | -- | -0.091 | 19.6 | -- | -- | -- | -- |
| 285.39 | 0.79 | 5.51 | 2.59 | -- | 0.755 | -- | -- | -0.0116 | -- | 19.09 | 120 | -- | -- |
| 254.9 | 0.744 | 5.68 | -- | 1.66 | -1.23 | -- | -- | -0.522 | 19.7 | 12.9 | 47520 | -- | -- |
| 303.51 | 0.814 | 5.54 | 2.37 | -- | -- | -- | -- | -0.116 | -- | -- | -- | -- | -- |
| 302.38 | 0.813 | 5.64 | -- | 1.66 | -- | -- | -- | -0.357 | 19.7 | -- | -- | -- | -- |
| 334.28 | 0.852 | 5.72 | -- | -- | -1.59 | -- | -- | -0.933 | -- | 22.01 | 47520 | -- | -- |
| 451.53 | 0.992 | 5.6 | -- | -- | -- | -- | -- | -0.379 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 124.83 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 2 | 124.94 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 21 | 125.66 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 23 | 125.69 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 28 | 125.89 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 36 | 125.95 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 11 | 11 |
| 45 | 126.02 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 123 | 127.04 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 20 | 2 |
| 125 | 127.05 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 137 | 127.23 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 156 | 127.39 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 164 | 127.44 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 8 | 6 |
| 168 | 127.46 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 9 | 5 |
| 173 | 127.50 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 10 | 4 |
| 175 | 127.51 | temperature | 20.0 | 14400 | > th | dose independent | sin | 20 | NA |
| 195 | 127.66 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 199 | 127.68 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 206 | 127.70 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 4 |
| 217 | 127.74 | temperature | 20.0 | 14400 | < th | dose independent | sin | 19 | NA |
| 235 | 127.82 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 237 | 127.82 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 2 |
| 242 | 127.85 | wind | 1.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 275 | 127.98 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 9 | 2 |
| 281 | 128.01 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 283 | 128.01 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 9 | 5 |
| 289 | 128.03 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 290 | 128.03 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 2 |
| 302 | 128.11 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 7 | 4 |
| 310 | 128.13 | temperature | 20.0 | 270 | > th | dose independent | rect. | 8 | 18 |
| 316 | 128.15 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 321 | 128.16 | temperature | 25.0 | 14400 | < th | dose dependent | sin | 22 | NA |
| 342 | 128.28 | temperature | 25.0 | 10 | < th | dose dependent | sin | 16 | NA |
| 374 | 128.40 | temperature | 20.0 | 90 | > th | dose independent | rect. | 8 | 22 |
| 394 | 128.49 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 396 | 128.49 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 5 |
| 400 | 128.51 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 451 | 128.67 | temperature | 20.0 | 270 | < th | dose independent | rect. | 10 | 16 |
| 469 | 128.73 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 12 | 15 |
| 522 | 128.92 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 12 | 2 |
| 523 | 128.92 | temperature | 20.0 | 270 | > th | dose independent | rect. | 9 | 14 |
| 535 | 128.99 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 16 |
| 559 | 129.05 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 14 | 13 |
| 560 | 129.06 | temperature | 20.0 | 90 | < th | dose independent | sin | 15 | NA |
| 585 | 129.14 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 593 | 129.17 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 8 |
| 596 | 129.17 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 8 |
| 602 | 129.19 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 8 | 17 |
| 616 | 129.24 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 7 | 12 |
| 622 | 129.25 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 7 | 15 |
| 639 | 129.29 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 15 |
| 651 | 129.33 | temperature | 20.0 | 90 | < th | dose independent | rect. | 15 | 12 |
| 667 | 129.37 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 701 | 129.44 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 21 | 12 |
| 705 | 129.47 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 740 | 129.54 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 8 | 15 |
| 742 | 129.55 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 767 | 129.61 | temperature | 20.0 | 90 | < th | dose independent | rect. | 5 | 22 |
| 819 | 129.75 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 12 | 2 |
| 850 | 129.81 | temperature | 20.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 853 | 129.82 | temperature | 20.0 | 270 | > th | dose independent | sin | 20 | NA |
| 862 | 129.84 | temperature | 20.0 | 90 | < th | dose independent | rect. | 11 | 22 |
| 870 | 129.87 | temperature | 20.0 | 90 | > th | dose independent | sin | 18 | NA |
| 954 | 130.05 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 22 | NA |
| 960 | 130.07 | wind | 5.0 | 14400 | < th | dose independent | rect. | 21 | 12 |
| 962 | 130.07 | temperature | 20.0 | 90 | < th | dose independent | rect. | 22 | 23 |