Os11g0129000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Multi antimicrobial extrusion protein MatE family protein.
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Os11g0129000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Multi antimicrobial extrusion protein MatE family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 482.43 | 1.03 | 11.5 | -2.94 | 3.76 | -2.67 | 4.96 | -2.2 | -0.735 | 9.02 | 73.92 | 1172 | -- | -- |
| 493 | 1.03 | 11.5 | -3.21 | 3.81 | -2.75 | 4.84 | -- | -0.776 | 8.95 | 74 | 1171 | -- | -- |
| 561.41 | 1.1 | 11.6 | -2.94 | 3.56 | -2.57 | -- | -0.826 | -0.783 | 8.97 | 73.68 | 1222 | -- | -- |
| 562.56 | 1.1 | 11.6 | -3.07 | 3.72 | -2.68 | -- | -- | -0.808 | 9.03 | 73.02 | 1174 | -- | -- |
| 1150.12 | 1.58 | 11.7 | -2.83 | -- | -2.46 | -- | -0.795 | -0.716 | -- | 74 | 1430 | -- | -- |
| 723.63 | 1.26 | 11.5 | -2.72 | 3.27 | -- | 4.39 | -- | -0.476 | 8.37 | -- | -- | -- | -- |
| 784.15 | 1.31 | 11.5 | -2.59 | 3.26 | -- | -- | -- | -0.478 | 8.34 | -- | -- | -- | -- |
| 1154.04 | 1.58 | 11.7 | -3.02 | -- | -2.47 | -- | -- | -0.778 | -- | 73.64 | 1430 | -- | -- |
| 798.97 | 1.32 | 11.5 | -- | 3.5 | -2.37 | -- | -- | -0.444 | 8.94 | 74.09 | 1227 | -- | -- |
| 1374.74 | 1.73 | 11.6 | -2.57 | -- | -- | -- | -- | -0.443 | -- | -- | -- | -- | -- |
| 961.22 | 1.45 | 11.4 | -- | 3.25 | -- | -- | -- | -0.189 | 8.4 | -- | -- | -- | -- |
| 1385.43 | 1.73 | 11.6 | -- | -- | -2.19 | -- | -- | -0.411 | -- | 74.97 | 1432 | -- | -- |
| 1549.27 | 1.84 | 11.5 | -- | -- | -- | -- | -- | -0.158 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 484.30 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 5 | 489.70 | humidity | 50 | 720 | > th | dose dependent | sin | 18 | NA |
| 6 | 489.94 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 8 | 490.09 | humidity | 60 | 720 | > th | dose dependent | rect. | 11 | 13 |
| 16 | 491.38 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 19 |
| 72 | 497.95 | humidity | 90 | 720 | < th | dose dependent | sin | 18 | NA |
| 82 | 499.09 | humidity | 90 | 720 | < th | dose dependent | rect. | 10 | 14 |
| 86 | 499.24 | humidity | 70 | 720 | > th | dose independent | rect. | 13 | 13 |
| 106 | 501.04 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 5 |
| 124 | 502.26 | humidity | 70 | 720 | > th | dose independent | sin | 17 | NA |
| 152 | 503.13 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 176 | 504.30 | humidity | 90 | 720 | < th | dose dependent | rect. | 13 | 9 |
| 198 | 505.16 | humidity | 80 | 1440 | > th | dose independent | sin | 2 | NA |
| 201 | 505.26 | humidity | 70 | 720 | < th | dose independent | rect. | 13 | 20 |
| 204 | 505.41 | humidity | 90 | 1440 | < th | dose dependent | rect. | 5 | 10 |
| 208 | 505.52 | humidity | 90 | 1440 | < th | dose dependent | sin | 2 | NA |
| 227 | 506.56 | humidity | 50 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 316 | 508.90 | humidity | 90 | 720 | < th | dose dependent | rect. | 5 | 18 |
| 344 | 509.43 | humidity | 50 | 1440 | > th | dose dependent | rect. | 7 | 8 |
| 375 | 509.99 | humidity | 70 | 720 | < th | dose independent | sin | 16 | NA |
| 390 | 510.26 | humidity | 70 | 720 | < th | dose independent | rect. | 15 | 4 |
| 419 | 510.78 | humidity | 80 | 720 | < th | dose dependent | rect. | 13 | 20 |
| 423 | 510.84 | humidity | 60 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 434 | 511.18 | humidity | 70 | 720 | < th | dose independent | rect. | 13 | 7 |
| 518 | 512.23 | humidity | 80 | 1440 | < th | dose dependent | rect. | 18 | 20 |
| 523 | 512.36 | humidity | 50 | 1440 | > th | dose dependent | sin | 1 | NA |
| 543 | 512.53 | humidity | 80 | 1440 | < th | dose dependent | rect. | 21 | 17 |
| 551 | 512.70 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 589 | 513.25 | humidity | 80 | 720 | < th | dose independent | rect. | 10 | 11 |
| 703 | 514.72 | humidity | 90 | 720 | < th | dose dependent | no | NA | NA |
| 782 | 515.87 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 880 | 516.78 | humidity | 50 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 901 | 517.00 | humidity | 80 | 720 | < th | dose independent | rect. | 7 | 15 |