Os11g0128900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Multi antimicrobial extrusion protein MatE family protein.
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Os11g0128900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Multi antimicrobial extrusion protein MatE family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 382.49 | 0.919 | 6.88 | -3.23 | 2.93 | 2.74 | 3.46 | -0.129 | -0.0458 | 8.56 | 79.97 | 1200 | -- | -- |
| 382.39 | 0.911 | 6.89 | -3.21 | 2.99 | 2.77 | 3.48 | -- | -0.045 | 8.58 | 80.07 | 1171 | -- | -- |
| 420.07 | 0.955 | 6.9 | -3.14 | 2.92 | 2.75 | -- | -0.889 | -0.0637 | 8.49 | 80.25 | 1200 | -- | -- |
| 421.44 | 0.956 | 6.89 | -3.09 | 2.9 | 2.65 | -- | -- | -0.046 | 8.49 | 80 | 1205 | -- | -- |
| 826.75 | 1.34 | 6.98 | -3.04 | -- | 2.51 | -- | -0.486 | -0.0749 | -- | 83.95 | 1394 | -- | -- |
| 544.12 | 1.09 | 6.91 | -2.74 | 2.72 | -- | 3.25 | -- | -0.143 | 7.91 | -- | -- | -- | -- |
| 574.89 | 1.12 | 6.91 | -2.65 | 2.72 | -- | -- | -- | -0.148 | 7.84 | -- | -- | -- | -- |
| 826.35 | 1.34 | 6.97 | -2.98 | -- | 2.47 | -- | -- | -0.057 | -- | 84 | 1398 | -- | -- |
| 652.23 | 1.19 | 6.85 | -- | 2.84 | 2.3 | -- | -- | 0.145 | 8.53 | 90.37 | 1215 | -- | -- |
| 976.65 | 1.46 | 6.98 | -2.62 | -- | -- | -- | -- | -0.11 | -- | -- | -- | -- | -- |
| 759.96 | 1.29 | 6.85 | -- | 2.7 | -- | -- | -- | 0.147 | 7.91 | -- | -- | -- | -- |
| 1043.31 | 1.5 | 6.92 | -- | -- | 2.16 | -- | -- | 0.169 | -- | 91.62 | 1413 | -- | -- |
| 1157.5 | 1.59 | 6.92 | -- | -- | -- | -- | -- | 0.18 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 388.38 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 9 |
| 2 | 388.64 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 18 |
| 8 | 393.22 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 9 |
| 9 | 393.94 | humidity | 70 | 720 | > th | dose independent | sin | 13 | NA |
| 25 | 397.02 | humidity | 90 | 720 | < th | dose dependent | rect. | 16 | 7 |
| 29 | 397.40 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 22 |
| 35 | 398.05 | humidity | 70 | 720 | < th | dose independent | rect. | 15 | 18 |
| 41 | 398.56 | humidity | 80 | 1440 | < th | dose dependent | sin | 4 | NA |
| 47 | 398.92 | humidity | 70 | 720 | < th | dose independent | sin | 13 | NA |
| 54 | 399.34 | humidity | 50 | 720 | > th | dose dependent | sin | 16 | NA |
| 77 | 400.36 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 82 | 400.58 | humidity | 90 | 720 | < th | dose dependent | sin | 15 | NA |
| 89 | 400.80 | humidity | 80 | 1440 | < th | dose dependent | rect. | 6 | 8 |
| 94 | 400.84 | humidity | 80 | 1440 | < th | dose dependent | rect. | 2 | 12 |
| 104 | 401.10 | humidity | 80 | 1440 | < th | dose dependent | rect. | 1 | 17 |
| 110 | 401.21 | humidity | 80 | 1440 | < th | dose dependent | rect. | 6 | 12 |
| 114 | 401.23 | humidity | 80 | 1440 | < th | dose dependent | rect. | 20 | 22 |
| 137 | 401.55 | humidity | 80 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 207 | 402.43 | humidity | 80 | 1440 | < th | dose dependent | rect. | 6 | 21 |
| 226 | 402.49 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 239 | 402.64 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 19 |
| 285 | 403.31 | humidity | 70 | 720 | < th | dose independent | rect. | 15 | 5 |
| 328 | 404.11 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 20 |
| 334 | 404.24 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 361 | 404.58 | humidity | 80 | 720 | < th | dose dependent | rect. | 16 | 17 |
| 369 | 404.78 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 6 |
| 411 | 405.55 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 427 | 405.99 | humidity | 50 | 1440 | > th | dose dependent | rect. | 7 | 8 |
| 439 | 406.28 | humidity | 50 | 1440 | > th | dose dependent | rect. | 7 | 10 |
| 513 | 407.32 | humidity | 50 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 542 | 407.73 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 566 | 408.06 | humidity | 50 | 1440 | > th | dose dependent | sin | 1 | NA |
| 721 | 410.25 | humidity | 50 | 720 | > th | dose dependent | rect. | 5 | 19 |
| 831 | 411.54 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 856 | 411.76 | humidity | 50 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 938 | 412.78 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |