Os11g0128800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Homoserine dehydrogenase-like protein.
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Os11g0128800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Homoserine dehydrogenase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.12 | 0.211 | 13 | -1.6 | 0.343 | 0.619 | -0.144 | -1.36 | -0.176 | 20.8 | 25.6 | 845 | -- | -- |
| 20.6 | 0.211 | 13 | -1.4 | 0.367 | 0.52 | -0.345 | -- | -0.139 | 20.4 | 25.1 | 881 | -- | -- |
| 20.18 | 0.209 | 13 | -1.6 | 0.345 | 0.618 | -- | -1.4 | -0.175 | 20.8 | 25.6 | 851 | -- | -- |
| 20.75 | 0.212 | 13 | -1.36 | 0.382 | 0.474 | -- | -- | -0.129 | 20.6 | 25.3 | 878 | -- | -- |
| 24.78 | 0.232 | 13 | -1.77 | -- | 0.91 | -- | -2.12 | -0.243 | -- | 25 | 771 | -- | -- |
| 25.99 | 0.239 | 13 | -1.25 | 0.516 | -- | -0.139 | -- | -0.0947 | 20.8 | -- | -- | -- | -- |
| 26.06 | 0.239 | 13 | -1.25 | 0.517 | -- | -- | -- | -0.0947 | 20.8 | -- | -- | -- | -- |
| 26.16 | 0.238 | 13 | -1.41 | -- | 0.727 | -- | -- | -0.165 | -- | 24.6 | 761 | -- | -- |
| 66.42 | 0.38 | 13 | -- | 0.479 | 0.144 | -- | -- | 0.0465 | 20.5 | 26.59 | 864 | -- | -- |
| 41.2 | 0.3 | 13 | -1.25 | -- | -- | -- | -- | -0.0988 | -- | -- | -- | -- | -- |
| 66.94 | 0.383 | 13 | -- | 0.521 | -- | -- | -- | 0.044 | 20.6 | -- | -- | -- | -- |
| 75.86 | 0.406 | 13 | -- | -- | 0.471 | -- | -- | 0.0184 | -- | 25 | 698 | -- | -- |
| 82.17 | 0.423 | 13 | -- | -- | -- | -- | -- | 0.0395 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.18 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 9 |
| 3 | 19.27 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 6 |
| 30 | 19.78 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 12 |
| 31 | 19.79 | temperature | 20 | 720 | > th | dose dependent | rect. | 11 | 10 |
| 32 | 19.80 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 9 |
| 39 | 19.82 | temperature | 25 | 720 | > th | dose independent | rect. | 10 | 11 |
| 59 | 19.94 | temperature | 30 | 720 | < th | dose dependent | sin | 21 | NA |
| 76 | 19.99 | temperature | 25 | 720 | > th | dose dependent | sin | 18 | NA |
| 115 | 20.09 | temperature | 25 | 270 | < th | dose independent | rect. | 12 | 11 |
| 226 | 20.38 | temperature | 25 | 720 | > th | dose independent | sin | 21 | NA |
| 266 | 20.46 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 7 |
| 325 | 20.55 | temperature | 25 | 720 | < th | dose independent | sin | 21 | NA |
| 364 | 20.60 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 366 | 20.61 | temperature | 10 | 720 | > th | dose dependent | sin | 21 | NA |
| 367 | 20.61 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 432 | 20.74 | temperature | 25 | 270 | > th | dose independent | sin | 18 | NA |
| 840 | 21.38 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 15 |
| 943 | 21.51 | wind | 9 | 1440 | < th | dose dependent | rect. | 4 | 2 |