Os11g0128000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Exostosin-like family protein.
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Os11g0128000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Exostosin-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.16 | 0.254 | 9.14 | 1.21 | 0.509 | 0.626 | -0.911 | -0.712 | 0.234 | 19.5 | 25.5 | 14 | -- | -- |
| 29.34 | 0.254 | 9.13 | 1.29 | 0.52 | 0.552 | -0.904 | -- | 0.256 | 19.3 | 25.5 | 14 | -- | -- |
| 31.16 | 0.26 | 9.14 | 1.26 | 0.532 | 0.524 | -- | -0.655 | 0.241 | 18.9 | 25.5 | 13 | -- | -- |
| 31.33 | 0.262 | 9.13 | 1.33 | 0.539 | 0.46 | -- | -- | 0.261 | 18.8 | 25.5 | 13 | -- | -- |
| 41.82 | 0.301 | 9.15 | 1.06 | -- | 0.81 | -- | -1.51 | 0.154 | -- | 24.4 | 230 | -- | -- |
| 33.97 | 0.273 | 9.13 | 1.39 | 0.643 | -- | -0.519 | -- | 0.289 | 18.2 | -- | -- | -- | -- |
| 34.54 | 0.275 | 9.13 | 1.39 | 0.642 | -- | -- | -- | 0.288 | 17.9 | -- | -- | -- | -- |
| 42.73 | 0.304 | 9.13 | 1.27 | -- | 0.689 | -- | -- | 0.207 | -- | 24.32 | 194 | -- | -- |
| 76 | 0.406 | 9.16 | -- | 0.426 | 0.819 | -- | -- | 0.095 | 20 | 25.04 | 39 | -- | -- |
| 55.9 | 0.349 | 9.11 | 1.38 | -- | -- | -- | -- | 0.273 | -- | -- | -- | -- | -- |
| 85.8 | 0.433 | 9.16 | -- | 0.621 | -- | -- | -- | 0.132 | 18 | -- | -- | -- | -- |
| 83.9 | 0.427 | 9.17 | -- | -- | 0.884 | -- | -- | 0.0424 | -- | 23.95 | 196 | -- | -- |
| 105.82 | 0.48 | 9.15 | -- | -- | -- | -- | -- | 0.12 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.72 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 10 |
| 4 | 26.21 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 10 | 26.32 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 10 |
| 32 | 26.80 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 11 |
| 36 | 26.83 | temperature | 10 | 90 | > th | dose dependent | sin | 2 | NA |
| 104 | 27.28 | temperature | 30 | 90 | < th | dose dependent | sin | 2 | NA |
| 107 | 27.29 | temperature | 30 | 270 | < th | dose dependent | sin | 4 | NA |
| 121 | 27.34 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 2 |
| 124 | 27.35 | temperature | 25 | 90 | > th | dose independent | rect. | 7 | 10 |
| 127 | 27.36 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 8 |
| 131 | 27.37 | temperature | 25 | 270 | < th | dose independent | sin | 4 | NA |
| 172 | 27.49 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 178 | 27.53 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 4 |
| 342 | 27.97 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 10 |
| 437 | 28.16 | temperature | 25 | 270 | > th | dose independent | sin | 4 | NA |
| 569 | 28.36 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 622 | 28.48 | temperature | 25 | 90 | > th | dose independent | sin | 1 | NA |
| 732 | 28.65 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 4 |
| 743 | 28.67 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 806 | 28.76 | humidity | 90 | 90 | < th | dose independent | rect. | 8 | 9 |
| 988 | 28.94 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 2 | 17 |