Os11g0126900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NAC domain transcription factor.
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Os11g0126900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to NAC domain transcription factor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 359.05 | 0.89 | 7.61 | 2 | 4.67 | -1.87 | -3.13 | -8.63 | -0.212 | 5.82 | 1.981 | 31436 | -- | -- |
| 457.21 | 0.996 | 7.34 | 2.58 | 4.86 | -2.01 | -3.14 | -- | 0.0022 | 5.92 | 15.42 | 30013 | -- | -- |
| 380.12 | 0.908 | 7.61 | 2.06 | 4.71 | -1.9 | -- | -8.51 | -0.191 | 5.9 | 1.876 | 31546 | -- | -- |
| 445.86 | 0.983 | 7.33 | 3.25 | 4.82 | -2.2 | -- | -- | 0.2 | 5.97 | 20.16 | 28707 | -- | -- |
| 1342.23 | 1.71 | 7.63 | 2.39 | -- | -3.44 | -- | -7.92 | 0.237 | -- | 1.91 | 30961 | -- | -- |
| 607.17 | 1.16 | 7.41 | 3.45 | 4.71 | -- | -2.72 | -- | -0.17 | 5.97 | -- | -- | -- | -- |
| 624.92 | 1.17 | 7.4 | 3.43 | 4.7 | -- | -- | -- | -0.158 | 6.03 | -- | -- | -- | -- |
| 1354.19 | 1.71 | 7.44 | 3.89 | -- | -4.18 | -- | -- | 0.484 | -- | 3.45 | 29507 | -- | -- |
| 625.01 | 1.16 | 7.38 | -- | 4.9 | -2.99 | -- | -- | -0.0309 | 5.8 | 37.67 | 30100 | -- | -- |
| 1770.25 | 1.97 | 7.48 | 3.57 | -- | -- | -- | -- | -0.052 | -- | -- | -- | -- | -- |
| 935.75 | 1.43 | 7.49 | -- | 4.75 | -- | -- | -- | -0.541 | 6 | -- | -- | -- | -- |
| 1602.56 | 1.86 | 7.33 | -- | -- | -4.09 | -- | -- | 0.627 | -- | 6.88 | 26643 | -- | -- |
| 2106.52 | 2.14 | 7.57 | -- | -- | -- | -- | -- | -0.448 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 353.33 | temperature | 25 | 43200 | > th | dose dependent | rect. | 4 | 4 |
| 2 | 353.46 | temperature | 25 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 20 | 356.25 | temperature | 25 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 29 | 356.71 | temperature | 25 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 30 | 356.74 | temperature | 30 | 43200 | > th | dose independent | rect. | 8 | 8 |
| 45 | 356.85 | temperature | 30 | 43200 | < th | dose independent | rect. | 4 | 12 |
| 48 | 356.87 | temperature | 30 | 43200 | > th | dose independent | sin | 5 | NA |
| 51 | 356.87 | temperature | 30 | 43200 | < th | dose independent | rect. | 20 | 20 |
| 52 | 356.88 | temperature | 30 | 43200 | < th | dose independent | rect. | 8 | 8 |
| 57 | 356.89 | temperature | 30 | 43200 | < th | dose independent | rect. | 22 | 18 |
| 62 | 356.96 | temperature | 30 | 43200 | < th | dose independent | sin | 5 | NA |
| 174 | 357.91 | temperature | 30 | 43200 | > th | dose independent | rect. | 14 | 21 |
| 180 | 357.99 | temperature | 30 | 43200 | < th | dose independent | rect. | 14 | 21 |
| 194 | 358.19 | temperature | 30 | 43200 | > th | dose independent | no | NA | NA |
| 301 | 358.22 | temperature | 30 | 43200 | < th | dose independent | rect. | 4 | 17 |
| 328 | 358.24 | temperature | 30 | 43200 | < th | dose independent | rect. | 8 | 13 |
| 350 | 358.25 | temperature | 30 | 43200 | < th | dose independent | no | NA | NA |
| 364 | 358.25 | temperature | 30 | 43200 | < th | dose independent | rect. | 8 | 22 |
| 372 | 358.25 | temperature | 30 | 43200 | < th | dose independent | rect. | 22 | 23 |
| 481 | 358.98 | temperature | 30 | 43200 | > th | dose independent | sin | 10 | NA |
| 494 | 359.09 | temperature | 30 | 43200 | < th | dose independent | sin | 10 | NA |
| 497 | 359.16 | temperature | 30 | 43200 | > th | dose independent | rect. | 12 | 3 |
| 513 | 359.19 | wind | 1 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 525 | 359.42 | temperature | 30 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 580 | 359.63 | temperature | 30 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 602 | 359.96 | wind | 1 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 617 | 360.19 | temperature | 25 | 43200 | > th | dose dependent | sin | 9 | NA |
| 736 | 361.05 | temperature | 30 | 43200 | > th | dose dependent | rect. | 8 | 7 |
| 754 | 361.12 | temperature | 30 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 757 | 361.18 | temperature | 30 | 43200 | > th | dose dependent | sin | 4 | NA |
| 807 | 361.45 | temperature | 30 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 901 | 361.87 | temperature | 30 | 43200 | > th | dose dependent | no | NA | NA |