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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0126500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Plant MuDR transposase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.84 (0.032) R2 : 0.0177
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.193 (0.0674) R2dN8 : 0.0228 R2N8 : 0.0177
σ : 0.603
deviance : 166.94
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
159.66 0.594 2.91 -0.412 0.00452 -1 0.548 6.37 0.188 18.8 1000 674 -- --
165.63 0.604 2.84 -0.0508 0.00515 0.138 0.508 -- 0.173 17.9 1000 674 -- --
160.35 0.59 2.9 -0.412 0.0303 -0.991 -- 6.25 0.191 13.6 1000 693 -- --
166.22 0.6 2.84 -0.0542 0.00751 0.179 -- -- 0.175 18 999.1 1270 -- --
160.4 0.59 2.9 -0.411 -- -0.979 -- 6.19 0.19 -- 1000 693 -- --
166.15 0.604 2.84 -0.0751 0.00329 -- 0.502 -- 0.182 17.9 -- -- -- --
166.77 0.605 2.84 -0.0791 0.00605 -- -- -- 0.184 18.3 -- -- -- --
166.22 0.6 2.84 -0.0543 -- 0.179 -- -- 0.175 -- 999.1 1270 -- --
166.29 0.601 2.84 -- 0.00845 0.19 -- -- 0.18 18.3 999.1 1270 -- --
166.77 0.603 2.84 -0.0793 -- -- -- -- 0.184 -- -- -- -- --
166.93 0.604 2.84 -- 0.00723 -- -- -- 0.193 17.7 -- -- -- --
166.3 0.601 2.84 -- -- 0.191 -- -- 0.18 -- 999.1 1270 -- --
166.94 0.603 2.84 -- -- -- -- -- 0.193 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 156.75 temperature 25.0 270 > th dose independent rect. 1 1
2 156.99 atmosphere 1000.0 720 > th dose independent rect. 3 20
3 157.04 atmosphere 1000.0 720 > th dose independent rect. 11 19
7 157.30 atmosphere 1000.0 720 > th dose independent rect. 11 12
9 157.51 temperature 25.0 90 > th dose independent rect. 1 4
16 157.82 temperature 25.0 270 > th dose dependent rect. 1 1
24 157.94 atmosphere 1000.0 720 > th dose independent rect. 10 7
27 158.04 temperature 25.0 90 > th dose dependent rect. 1 4
29 158.12 atmosphere 1000.0 720 > th dose independent rect. 3 14
30 158.14 atmosphere 1000.0 720 > th dose independent rect. 18 23
35 158.19 atmosphere 1000.0 720 > th dose independent rect. 5 17
36 158.27 atmosphere 1000.0 720 > th dose independent rect. 11 4
40 158.30 atmosphere 1000.0 720 > th dose independent rect. 18 21
54 158.58 atmosphere 995.0 4320 > th dose independent rect. 19 10
65 158.77 atmosphere 1000.0 720 > th dose independent rect. 16 23
67 158.81 wind 1.0 30 < th dose independent rect. 2 1
69 158.87 wind 3.0 30 < th dose dependent rect. 2 1
77 159.01 atmosphere 1000.0 720 > th dose independent rect. 3 12
87 159.08 atmosphere 1005.0 30 > th dose independent rect. 2 1
88 159.08 atmosphere 1005.0 30 > th dose dependent rect. 2 1
89 159.09 humidity 80.0 30 > th dose independent rect. 2 1
104 159.16 temperature 10.0 30 > th dose independent rect. 2 1
106 159.16 temperature 25.0 30 < th dose independent rect. 2 1
108 159.16 humidity 50.0 30 > th dose independent rect. 2 1
111 159.16 atmosphere 995.0 30 > th dose independent rect. 2 1
112 159.16 atmosphere 1010.0 30 < th dose independent rect. 2 1
114 159.16 radiation 1.0 30 < th dose independent rect. 2 1
119 159.16 precipitation 0.1 30 < th dose independent rect. 2 1
120 159.16 atmosphere 1000.0 720 < th dose independent rect. 15 3
122 159.16 temperature 10.0 30 > th dose independent rect. 3 23
123 159.16 humidity 50.0 30 > th dose dependent rect. 2 1
126 159.16 radiation 1.0 30 < th dose dependent rect. 2 1
131 159.16 precipitation 0.1 30 < th dose dependent rect. 2 1
151 159.30 atmosphere 1015.0 30 < th dose dependent rect. 2 1
167 159.35 atmosphere 1000.0 720 < th dose independent sin 19 NA
178 159.37 atmosphere 1000.0 720 < th dose independent rect. 13 12
180 159.37 atmosphere 1000.0 720 > th dose independent rect. 16 15
197 159.40 atmosphere 1000.0 720 < th dose independent rect. 11 14
201 159.41 atmosphere 1000.0 720 > th dose independent rect. 5 10
219 159.43 temperature 20.0 10 > th dose dependent rect. 2 3
229 159.46 atmosphere 995.0 4320 > th dose independent rect. 19 8
233 159.47 atmosphere 995.0 4320 > th dose independent rect. 22 7
250 159.50 atmosphere 1000.0 720 > th dose independent sin 22 NA
298 159.58 temperature 30.0 30 < th dose dependent rect. 2 1
328 159.64 atmosphere 1000.0 720 > th dose independent rect. 16 7
362 159.71 atmosphere 995.0 4320 > th dose independent rect. 1 1
365 159.71 atmosphere 1000.0 720 < th dose dependent rect. 16 2
387 159.76 atmosphere 1000.0 720 > th dose independent no NA NA
388 159.76 wind 9.0 4320 > th dose independent rect. 23 1
389 159.76 atmosphere 995.0 4320 < th dose independent rect. 1 1
394 159.76 atmosphere 995.0 4320 < th dose independent rect. 21 1
544 159.76 wind 9.0 4320 > th dose dependent rect. 23 1
546 159.76 atmosphere 995.0 4320 < th dose dependent rect. 1 1
551 159.76 atmosphere 995.0 4320 < th dose dependent rect. 21 1
757 159.87 atmosphere 995.0 4320 > th dose independent rect. 19 13
772 159.89 wind 1.0 90 < th dose dependent rect. 15 1
774 159.90 wind 1.0 30 < th dose independent rect. 15 1
783 159.91 atmosphere 1000.0 720 < th dose independent no NA NA
791 159.95 humidity 80.0 270 < th dose independent rect. 4 2
798 159.95 humidity 80.0 270 < th dose dependent rect. 4 2
827 160.06 temperature 20.0 10 < th dose independent rect. 6 2
840 160.11 wind 1.0 30 > th dose independent rect. 2 1
862 160.13 atmosphere 995.0 4320 > th dose independent rect. 19 16
878 160.15 temperature 20.0 10 < th dose dependent rect. 6 3
916 160.31 radiation 20.0 1440 < th dose independent rect. 17 12
923 160.33 temperature 20.0 10 < th dose dependent rect. 6 6
932 160.37 radiation 10.0 43200 < th dose dependent rect. 3 1
935 160.39 atmosphere 1000.0 720 > th dose independent rect. 13 2
936 160.39 temperature 20.0 90 < th dose independent rect. 5 3
948 160.42 wind 9.0 1440 < th dose independent rect. 3 1
949 160.42 temperature 10.0 1440 > th dose independent rect. 3 1
952 160.42 temperature 30.0 1440 < th dose independent rect. 3 1
956 160.42 humidity 50.0 1440 > th dose independent rect. 3 1
965 160.42 atmosphere 995.0 1440 > th dose independent rect. 3 1
966 160.42 radiation 1.0 1440 < th dose independent rect. 3 1
988 160.42 temperature 10.0 1440 > th dose independent rect. 4 23
991 160.42 radiation 1.0 1440 < th dose dependent rect. 3 1