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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0126400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Nucleoside phosphatase GDA1/CD39 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.74 (0.0328) R2 : 2.18e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00687 (0.069) R2dN8 : 2.81e-05 R2N8 : 2.18e-05
σ : 0.617
deviance : 174.67
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
165.56 0.605 2.77 0.204 0.164 2.63 0.151 5.69 0.0305 8.16 17.07 779 -- --
170.83 0.613 2.74 0.171 0.152 -0.124 0.597 -- 0.0264 10.4 14.65 1953 -- --
165.58 0.599 2.77 0.206 0.168 2.63 -- 5.7 0.03 7.52 17.13 786 -- --
171.54 0.61 2.73 0.22 0.18 0.191 -- -- 0.036 8.29 17.94 781 -- --
167.09 0.602 2.78 0.207 -- 2.65 -- 5.72 0.0327 -- 17.17 789 -- --
170.86 0.613 2.73 0.176 0.156 -- 0.578 -- 0.0277 10.4 -- -- -- --
171.75 0.614 2.73 0.196 0.185 -- -- -- 0.0267 8.35 -- -- -- --
173.31 0.613 2.74 0.233 -- 0.234 -- -- 0.0415 -- 18.5 785 -- --
172.66 0.615 2.74 -- 0.185 -0.16 -- -- 0.00257 8.25 17.94 781 -- --
173.65 0.616 2.74 0.197 -- -- -- -- 0.0287 -- -- -- -- --
172.76 0.615 2.74 -- 0.186 -- -- -- 0.00496 8.27 -- -- -- --
174.48 0.617 2.74 -- -- -0.205 -- -- 0.00289 -- 18.5 785 -- --
174.67 0.617 2.74 -- -- -- -- -- 0.00687 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 156.97 atmosphere 1000.0 90 < th dose independent rect. 4 5
2 157.00 atmosphere 1000.0 270 < th dose independent rect. 2 5
3 157.05 atmosphere 1000.0 270 < th dose independent rect. 5 1
7 157.70 atmosphere 1000.0 90 < th dose dependent rect. 4 6
8 157.86 atmosphere 1000.0 10 < th dose independent rect. 5 5
43 158.44 atmosphere 1000.0 270 < th dose dependent rect. 5 1
73 159.52 atmosphere 1000.0 10 < th dose independent rect. 8 2
74 159.52 atmosphere 1000.0 90 < th dose independent rect. 7 3
77 159.54 atmosphere 1000.0 90 < th dose independent rect. 8 1
118 160.17 atmosphere 1000.0 90 < th dose dependent rect. 9 1
158 160.94 radiation 10.0 10 > th dose independent rect. 6 1
184 160.94 radiation 10.0 10 > th dose dependent rect. 6 1
243 161.95 atmosphere 1005.0 30 < th dose independent rect. 9 5
263 162.48 atmosphere 1000.0 720 < th dose dependent rect. 22 4
264 162.49 wind 3.0 10 < th dose dependent rect. 5 8
272 162.75 temperature 20.0 90 > th dose independent rect. 3 4
276 162.80 temperature 20.0 270 > th dose independent rect. 3 1
287 163.24 atmosphere 1005.0 30 < th dose independent rect. 5 10
288 163.26 wind 1.0 720 > th dose independent rect. 7 1
291 163.27 atmosphere 1005.0 90 > th dose independent rect. 7 10
294 163.36 atmosphere 1005.0 90 > th dose independent rect. 7 12
296 163.38 atmosphere 1000.0 720 < th dose independent rect. 23 3
301 163.42 wind 1.0 10 < th dose dependent rect. 5 1
317 163.57 atmosphere 1015.0 30 < th dose dependent rect. 5 9
349 163.91 wind 9.0 4320 < th dose independent rect. 4 4
356 163.98 atmosphere 1005.0 10 > th dose dependent rect. 5 2
363 164.01 wind 1.0 720 > th dose independent rect. 6 3
372 164.08 atmosphere 1000.0 10 < th dose independent rect. 5 1
380 164.08 atmosphere 1000.0 10 < th dose dependent rect. 5 1
392 164.10 atmosphere 1005.0 30 < th dose independent sin 0 NA
406 164.14 atmosphere 1005.0 30 > th dose dependent rect. 3 4
438 164.31 temperature 20.0 720 > th dose independent rect. 7 1
445 164.36 wind 9.0 4320 < th dose independent rect. 7 1
462 164.45 atmosphere 1005.0 30 < th dose independent rect. 9 11
478 164.53 temperature 30.0 30 < th dose dependent rect. 5 2
481 164.54 atmosphere 1000.0 30 > th dose dependent rect. 7 12
492 164.60 atmosphere 1000.0 720 < th dose dependent rect. 1 1
495 164.61 radiation 30.0 30 < th dose independent rect. 7 22
497 164.61 radiation 10.0 10 < th dose dependent rect. 6 2
499 164.62 atmosphere 1005.0 30 > th dose independent rect. 7 6
512 164.69 atmosphere 1000.0 30 > th dose dependent rect. 7 10
525 164.73 wind 3.0 30 < th dose independent rect. 5 9
526 164.73 temperature 20.0 720 > th dose independent rect. 7 10
547 164.77 humidity 80.0 30 > th dose independent rect. 5 2
552 164.78 atmosphere 1000.0 720 < th dose independent rect. 1 1
604 164.96 atmosphere 1005.0 30 > th dose independent rect. 7 22
607 164.98 wind 3.0 270 > th dose independent rect. 24 5
611 165.00 temperature 25.0 30 > th dose dependent rect. 5 1
621 165.02 wind 1.0 270 > th dose dependent rect. 3 1
626 165.05 wind 1.0 90 > th dose independent rect. 5 1
630 165.06 atmosphere 1015.0 30 < th dose dependent rect. 5 7
639 165.08 wind 3.0 30 < th dose independent rect. 5 2
669 165.15 atmosphere 1005.0 30 < th dose independent rect. 5 15
670 165.15 atmosphere 1005.0 270 > th dose dependent rect. 3 1
671 165.15 wind 7.0 30 < th dose dependent rect. 5 2
680 165.18 temperature 10.0 1440 > th dose independent rect. 5 3
683 165.18 temperature 30.0 1440 < th dose independent rect. 5 3
687 165.18 humidity 50.0 1440 > th dose independent rect. 5 3
692 165.18 atmosphere 995.0 1440 > th dose independent rect. 5 3
693 165.18 atmosphere 1015.0 1440 < th dose independent rect. 5 3
707 165.18 temperature 10.0 1440 > th dose independent rect. 8 21
710 165.19 precipitation 0.1 30 < th dose independent rect. 5 2
716 165.19 precipitation 0.1 30 < th dose dependent rect. 5 2
719 165.20 temperature 10.0 30 > th dose independent rect. 5 2
721 165.20 temperature 30.0 30 < th dose independent rect. 5 2
722 165.20 humidity 50.0 30 > th dose independent rect. 5 2
725 165.20 atmosphere 995.0 30 > th dose independent rect. 5 2
726 165.20 atmosphere 1015.0 30 < th dose independent rect. 5 2
727 165.20 radiation 20.0 30 < th dose independent rect. 5 2
730 165.20 wind 3.0 270 > th dose independent rect. 1 3
733 165.20 temperature 10.0 30 > th dose independent rect. 7 22
743 165.22 humidity 80.0 30 > th dose dependent rect. 6 1
760 165.26 wind 1.0 270 > th dose dependent rect. 2 3
764 165.27 temperature 30.0 720 < th dose independent rect. 7 2
773 165.29 radiation 1.0 10 > th dose independent rect. 5 10
789 165.30 wind 9.0 30 < th dose independent rect. 7 22
795 165.33 temperature 20.0 1440 > th dose independent rect. 11 3
809 165.36 wind 1.0 30 > th dose independent rect. 4 3
816 165.36 wind 1.0 90 < th dose dependent rect. 4 1
830 165.39 radiation 40.0 30 < th dose dependent rect. 5 2
835 165.40 radiation 10.0 10 < th dose independent rect. 5 10
846 165.43 humidity 50.0 30 > th dose dependent rect. 5 2
875 165.47 atmosphere 1005.0 30 > th dose independent sin 23 NA
877 165.47 wind 3.0 30 < th dose independent rect. 5 7
887 165.48 wind 1.0 720 < th dose dependent rect. 7 1
892 165.49 wind 9.0 4320 > th dose independent rect. 3 1
925 165.49 wind 9.0 4320 > th dose dependent rect. 3 1
967 165.51 humidity 90.0 1440 < th dose independent rect. 11 2
972 165.52 temperature 20.0 1440 < th dose independent rect. 12 1
975 165.52 radiation 40.0 30 < th dose independent rect. 15 14
980 165.53 temperature 20.0 1440 < th dose independent rect. 17 1
984 165.53 wind 9.0 30 < th dose independent rect. 5 10
986 165.53 precipitation 0.1 720 < th dose independent rect. 18 12
991 165.53 precipitation 0.1 720 < th dose dependent rect. 18 12
997 165.54 precipitation 0.1 30 < th dose independent rect. 5 10
998 165.54 temperature 20.0 1440 < th dose dependent rect. 12 1
1000 165.54 radiation 10.0 90 < th dose dependent rect. 5 2