Os11g0122900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os11g0122900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 117.21 | 0.509 | 3.4 | -0.955 | 0.516 | 0.953 | -0.436 | -4.26 | 0.308 | 10.5 | 23.6 | 100 | -- | -- |
| 126.02 | 0.523 | 3.33 | -0.32 | 0.575 | 0.696 | -0.835 | -- | 0.492 | 11.4 | 14.8 | 175 | -- | -- |
| 117.97 | 0.506 | 3.4 | -0.963 | 0.525 | 0.945 | -- | -4.27 | 0.305 | 10.5 | 23.52 | 96 | -- | -- |
| 128.94 | 0.529 | 3.33 | -0.371 | 0.566 | 0.694 | -- | -- | 0.482 | 11.2 | 14.7 | 156 | -- | -- |
| 130.73 | 0.535 | 3.42 | -1.01 | -- | 1.18 | -- | -4.55 | 0.277 | -- | 23.69 | 37 | -- | -- |
| 130.81 | 0.536 | 3.31 | -0.196 | 0.665 | -- | -0.85 | -- | 0.582 | 12.4 | -- | -- | -- | -- |
| 133.91 | 0.542 | 3.31 | -0.229 | 0.668 | -- | -- | -- | 0.577 | 12.3 | -- | -- | -- | -- |
| 142.8 | 0.557 | 3.36 | -0.462 | -- | 1.16 | -- | -- | 0.413 | -- | 3.628 | 6 | -- | -- |
| 132.27 | 0.536 | 3.32 | -- | 0.589 | 0.512 | -- | -- | 0.542 | 11.6 | 14.8 | 153 | -- | -- |
| 161.97 | 0.595 | 3.33 | -0.251 | -- | -- | -- | -- | 0.567 | -- | -- | -- | -- | -- |
| 135.29 | 0.544 | 3.31 | -- | 0.671 | -- | -- | -- | 0.603 | 12.3 | -- | -- | -- | -- |
| 147.38 | 0.567 | 3.34 | -- | -- | 0.795 | -- | -- | 0.512 | -- | 23.69 | 12 | -- | -- |
| 163.63 | 0.597 | 3.32 | -- | -- | -- | -- | -- | 0.595 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 115.72 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 2 | 115.93 | temperature | 25 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 3 | 116.04 | temperature | 25 | 90 | > th | dose independent | rect. | 7 | 11 |
| 6 | 116.26 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 17 | 117.27 | temperature | 25 | 30 | > th | dose dependent | rect. | 7 | 16 |
| 25 | 117.46 | temperature | 20 | 720 | > th | dose dependent | rect. | 24 | 10 |
| 27 | 117.48 | temperature | 20 | 720 | > th | dose dependent | rect. | 2 | 8 |
| 28 | 117.48 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 11 |
| 32 | 117.53 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 5 |
| 41 | 117.67 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 64 | 117.88 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 10 |
| 66 | 117.95 | temperature | 25 | 90 | > th | dose independent | rect. | 7 | 16 |
| 67 | 117.95 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 8 |
| 73 | 118.00 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 14 |
| 77 | 118.05 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 12 |
| 91 | 118.10 | temperature | 25 | 90 | > th | dose dependent | rect. | 21 | 22 |
| 109 | 118.16 | temperature | 20 | 270 | > th | dose dependent | sin | 4 | NA |
| 119 | 118.26 | temperature | 25 | 90 | > th | dose independent | rect. | 7 | 5 |
| 120 | 118.27 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 12 |
| 127 | 118.33 | radiation | 30 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 135 | 118.36 | radiation | 30 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 137 | 118.37 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 11 |
| 140 | 118.37 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 22 |
| 144 | 118.40 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 153 | 118.42 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 10 |
| 169 | 118.46 | radiation | 30 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 233 | 118.60 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 275 | 118.67 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 303 | 118.69 | radiation | 40 | 43200 | < th | dose independent | rect. | 3 | 11 |
| 305 | 118.69 | radiation | 40 | 43200 | < th | dose independent | rect. | 24 | 14 |
| 309 | 118.69 | radiation | 1 | 720 | < th | dose dependent | sin | 9 | NA |
| 329 | 118.70 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 413 | 118.73 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 7 |
| 449 | 118.75 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 486 | 118.77 | temperature | 25 | 30 | > th | dose dependent | rect. | 5 | 14 |
| 659 | 118.80 | temperature | 25 | 90 | > th | dose dependent | rect. | 16 | 23 |
| 668 | 118.82 | radiation | 30 | 43200 | < th | dose independent | sin | 6 | NA |
| 685 | 118.82 | radiation | 40 | 43200 | > th | dose dependent | sin | 1 | NA |
| 736 | 118.83 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 13 |
| 829 | 118.86 | radiation | 10 | 43200 | < th | dose independent | rect. | 6 | 5 |
| 834 | 118.86 | radiation | 40 | 43200 | > th | dose dependent | no | NA | NA |