Os11g0121400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein kinase APK1A, chloroplast precursor (EC 2.7.1.-).
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Os11g0121400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein kinase APK1A, chloroplast precursor (EC 2.7.1.-).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 85.14 | 0.434 | 9.85 | -0.651 | 0.00858 | 0.738 | -1.9 | -1.45 | -0.327 | 20.5 | 1.762 | 87 | -- | -- |
| 87.29 | 0.435 | 9.86 | -0.603 | 0.0263 | 0.738 | 1.58 | -- | -0.336 | 5.65 | 2.38 | 91 | -- | -- |
| 91.44 | 0.445 | 9.85 | -0.585 | 0.0316 | 0.711 | -- | -0.538 | -0.321 | 8.27 | 2.213 | 91 | -- | -- |
| 93.34 | 0.45 | 9.85 | -0.589 | 0.0477 | 0.706 | -- | -- | -0.317 | 8.36 | 2.2 | 96 | -- | -- |
| 91.45 | 0.445 | 9.85 | -0.581 | -- | 0.723 | -- | -0.588 | -0.322 | -- | 2.211 | 92 | -- | -- |
| 98.73 | 0.466 | 9.82 | -0.545 | 0.85 | -- | -0.557 | -- | -0.257 | 12.6 | -- | -- | -- | -- |
| 99.96 | 0.468 | 9.82 | -0.567 | 0.851 | -- | -- | -- | -0.261 | 12.4 | -- | -- | -- | -- |
| 93.49 | 0.45 | 9.85 | -0.583 | -- | 0.721 | -- | -- | -0.317 | -- | 2.209 | 96 | -- | -- |
| 102.33 | 0.471 | 9.84 | -- | 0.0563 | 0.72 | -- | -- | -0.27 | 8 | 2.22 | 94 | -- | -- |
| 145.46 | 0.564 | 9.84 | -0.596 | -- | -- | -- | -- | -0.275 | -- | -- | -- | -- | -- |
| 108.44 | 0.487 | 9.81 | -- | 0.859 | -- | -- | -- | -0.198 | 12.4 | -- | -- | -- | -- |
| 102.34 | 0.471 | 9.83 | -- | -- | 0.725 | -- | -- | -0.258 | -- | 2.21 | 90 | -- | -- |
| 154.85 | 0.581 | 9.82 | -- | -- | -- | -- | -- | -0.208 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 80.66 | radiation | 1.0 | 90 | > th | dose independent | sin | 2 | NA |
| 3 | 81.49 | radiation | 1.0 | 10 | > th | dose independent | sin | 1 | NA |
| 6 | 81.96 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 22 | 22 |
| 8 | 82.42 | radiation | 1.0 | 270 | < th | dose independent | rect. | 22 | 22 |
| 10 | 82.58 | radiation | 1.0 | 90 | < th | dose independent | rect. | 1 | 16 |
| 14 | 82.75 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 1 | 15 |
| 19 | 83.06 | wind | 1.0 | 90 | > th | dose independent | rect. | 6 | 19 |
| 21 | 83.09 | wind | 1.0 | 90 | > th | dose independent | rect. | 1 | 5 |
| 24 | 83.14 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 6 | 19 |
| 25 | 83.33 | radiation | 1.0 | 90 | < th | dose independent | sin | 3 | NA |
| 33 | 83.59 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 1 | 7 |
| 37 | 83.66 | radiation | 1.0 | 270 | < th | dose independent | rect. | 23 | 18 |
| 43 | 83.73 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 4 | 21 |
| 58 | 83.98 | radiation | 1.0 | 90 | < th | dose dependent | sin | 2 | NA |
| 61 | 84.02 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 73 | 84.19 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 11 | 21 |
| 87 | 84.32 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 6 | 19 |
| 88 | 84.32 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 6 | 19 |
| 89 | 84.33 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 13 | 19 |
| 100 | 84.46 | wind | 1.0 | 270 | > th | dose independent | rect. | 4 | 21 |
| 106 | 84.50 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 21 |
| 108 | 84.50 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 21 |
| 117 | 84.54 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 4 | 9 |
| 129 | 84.63 | wind | 9.0 | 90 | < th | dose independent | rect. | 1 | 5 |
| 130 | 84.63 | temperature | 10.0 | 90 | > th | dose independent | rect. | 1 | 5 |
| 132 | 84.63 | temperature | 30.0 | 90 | < th | dose independent | rect. | 1 | 5 |
| 133 | 84.63 | humidity | 50.0 | 90 | > th | dose independent | rect. | 1 | 5 |
| 136 | 84.63 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 1 | 5 |
| 137 | 84.63 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 1 | 5 |
| 139 | 84.63 | radiation | 20.0 | 90 | < th | dose independent | rect. | 1 | 5 |
| 142 | 84.63 | temperature | 10.0 | 90 | > th | dose independent | rect. | 6 | 19 |
| 151 | 84.68 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 6 | 19 |
| 158 | 84.74 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 1 | 5 |
| 161 | 84.74 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 1 | 5 |
| 165 | 84.77 | radiation | 1.0 | 90 | > th | dose independent | rect. | 6 | 12 |
| 167 | 84.77 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 1 | 6 |
| 173 | 84.78 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 20 | 17 |
| 175 | 84.79 | radiation | 1.0 | 90 | < th | dose independent | rect. | 1 | 9 |
| 180 | 84.81 | temperature | 30.0 | 270 | < th | dose independent | rect. | 4 | 9 |
| 184 | 84.83 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 3 |
| 186 | 84.83 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 3 |
| 187 | 84.83 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 3 |
| 190 | 84.83 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 3 |
| 191 | 84.83 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 1 | 3 |
| 193 | 84.83 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 3 |
| 198 | 84.83 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 21 |
| 199 | 84.83 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 3 |
| 206 | 84.84 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 3 |
| 223 | 84.91 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 3 |
| 224 | 84.91 | radiation | 1.0 | 90 | > th | dose independent | rect. | 17 | 23 |
| 225 | 84.91 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 3 |
| 237 | 84.96 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 23 | 7 |
| 253 | 85.04 | radiation | 1.0 | 90 | > th | dose independent | rect. | 6 | 23 |
| 271 | 85.07 | temperature | 25.0 | 720 | < th | dose independent | rect. | 20 | 18 |
| 285 | 85.12 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 4 | 4 |
| 313 | 85.15 | humidity | 60.0 | 30 | > th | dose dependent | rect. | 1 | 10 |
| 320 | 85.17 | humidity | 80.0 | 30 | > th | dose independent | rect. | 1 | 9 |
| 326 | 85.18 | radiation | 1.0 | 10 | < th | dose dependent | sin | 2 | NA |
| 327 | 85.18 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 1 | 3 |
| 334 | 85.19 | wind | 9.0 | 1440 | < th | dose independent | rect. | 2 | 5 |
| 335 | 85.19 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 2 | 5 |
| 338 | 85.19 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 2 | 5 |
| 342 | 85.19 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 2 | 5 |
| 347 | 85.19 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 2 | 5 |
| 348 | 85.19 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 2 | 5 |
| 354 | 85.19 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 7 | 19 |
| 386 | 85.27 | temperature | 25.0 | 720 | < th | dose independent | sin | 6 | NA |
| 442 | 85.35 | temperature | 30.0 | 90 | < th | dose independent | rect. | 6 | 19 |
| 480 | 85.39 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 1 | 5 |
| 485 | 85.40 | radiation | 1.0 | 10 | < th | dose independent | sin | 2 | NA |
| 539 | 85.48 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 552 | 85.50 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 8 | 4 |
| 585 | 85.58 | radiation | 10.0 | 10 | < th | dose dependent | no | NA | NA |
| 613 | 85.61 | temperature | 20.0 | 720 | > th | dose independent | rect. | 8 | 19 |
| 623 | 85.63 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 1 | 7 |
| 636 | 85.66 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 19 |
| 642 | 85.68 | radiation | 1.0 | 10 | > th | dose independent | rect. | 6 | 11 |
| 663 | 85.69 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 3 |
| 664 | 85.69 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 1 | 5 |
| 666 | 85.70 | humidity | 80.0 | 10 | > th | dose independent | rect. | 1 | 7 |
| 687 | 85.75 | humidity | 50.0 | 90 | > th | dose independent | rect. | 6 | 19 |
| 708 | 85.80 | wind | 9.0 | 90 | < th | dose independent | rect. | 6 | 19 |
| 716 | 85.81 | humidity | 50.0 | 270 | > th | dose independent | rect. | 4 | 21 |
| 728 | 85.84 | wind | 9.0 | 270 | < th | dose dependent | rect. | 1 | 3 |
| 742 | 85.86 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 1 | 3 |
| 770 | 85.89 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 4 | 11 |
| 777 | 85.90 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 779 | 85.90 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 848 | 85.99 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 20 | 13 |
| 850 | 85.99 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 20 | 13 |
| 855 | 86.00 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 4 | 11 |
| 899 | 86.08 | temperature | 30.0 | 720 | < th | dose dependent | sin | 7 | NA |
| 939 | 86.14 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 6 | 10 |
| 944 | 86.15 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 9 | 2 |
| 953 | 86.17 | radiation | 20.0 | 10 | < th | dose independent | rect. | 1 | 7 |
| 956 | 86.17 | wind | 9.0 | 270 | < th | dose independent | rect. | 4 | 21 |
| 997 | 86.20 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 1 | 17 |