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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0121000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.97 (0.034) R2 : 0.504
β1 : 0.815 (0.132) R2dD : 0.0501 R2D : 0.0969
β2 : 1.29 (0.0829) R2dC : 0.275 R2C : 0.189
β3 : 1.53 (0.132) R2dE : 0.193 R2E : 0.179
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.12 (0.0769) R2dN8 : 0.00414 R2N8 : 0.0112
σ : 0.625
deviance : 180.31
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_____
C
peak time of C : 9.89
E
wheather : temperature
threshold : 17.6
memory length : 2160
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
177.64 0.626 5.04 0.367 1.13 1.4 0.034 -1.79 -0.00776 10 19.87 1487 -- --
180.21 0.625 4.97 0.806 1.29 1.51 0.171 -- 0.117 9.84 17.61 2149 -- --
177.64 0.621 5.04 0.358 1.13 1.4 -- -1.83 -0.0102 10 20 1485 -- --
180.31 0.625 4.97 0.815 1.29 1.53 -- -- 0.12 9.89 17.6 2160 -- --
244.97 0.733 5.03 0.697 -- 1.69 -- -2.2 0.0918 -- 18.9 1534 -- --
233.43 0.716 4.9 1.39 1.1 -- 0.0726 -- 0.452 9.84 -- -- -- --
233.45 0.716 4.9 1.4 1.1 -- -- -- 0.453 9.86 -- -- -- --
248.81 0.738 4.99 1.04 -- 1.7 -- -- 0.191 -- 17.6 2160 -- --
195.48 0.651 4.98 -- 1.15 1.89 -- -- 0.0849 10.1 15.2 3049 -- --
305.67 0.817 4.93 1.38 -- -- -- -- 0.453 -- -- -- -- --
284.87 0.79 4.94 -- 1.09 -- -- -- 0.297 9.76 -- -- -- --
270.4 0.766 5.04 -- -- 1.93 -- -- -0.0247 -- 10.97 5875 -- --
356.27 0.881 4.97 -- -- -- -- -- 0.299 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 173.86 temperature 25 270 < th dose dependent rect. 12 21
6 174.78 temperature 20 1440 > th dose dependent rect. 21 1
7 174.90 temperature 20 720 > th dose dependent rect. 18 14
8 174.90 temperature 20 1440 > th dose dependent rect. 16 15
16 175.17 temperature 20 1440 > th dose dependent rect. 17 6
18 175.20 temperature 30 720 < th dose dependent sin 14 NA
22 175.27 temperature 25 10 < th dose dependent rect. 12 21
31 175.47 temperature 20 1440 > th dose dependent sin 13 NA
58 175.75 temperature 10 720 > th dose dependent rect. 13 17
80 176.05 temperature 20 1440 > th dose dependent rect. 5 2
107 176.33 temperature 20 1440 > th dose dependent rect. 4 4
109 176.35 temperature 10 720 > th dose dependent sin 13 NA
112 176.36 temperature 10 720 > th dose dependent rect. 18 7
132 176.52 temperature 10 720 > th dose dependent rect. 17 14
146 176.57 temperature 30 720 < th dose dependent rect. 15 12
209 177.06 temperature 30 720 < th dose dependent rect. 17 10
295 177.58 temperature 30 1440 < th dose dependent rect. 17 6
304 177.62 wind 5 43200 > th dose independent rect. 11 4
319 177.70 temperature 20 1440 > th dose dependent no NA NA
334 177.77 temperature 20 1440 > th dose dependent rect. 20 23
335 177.77 temperature 20 1440 > th dose dependent rect. 24 23
360 177.88 wind 5 43200 < th dose independent rect. 11 4
414 178.14 wind 5 43200 > th dose independent rect. 10 6
444 178.23 temperature 10 1440 > th dose dependent rect. 21 1
450 178.26 temperature 10 1440 > th dose dependent rect. 18 1
457 178.27 temperature 30 1440 < th dose dependent rect. 21 1
463 178.29 wind 5 43200 > th dose independent rect. 13 1
469 178.30 temperature 30 270 < th dose dependent sin 11 NA
648 178.78 wind 5 43200 < th dose independent rect. 13 1
744 179.03 temperature 30 1440 < th dose dependent rect. 18 1
859 179.37 radiation 1 43200 < th dose independent rect. 18 11
867 179.40 wind 5 43200 < th dose independent rect. 8 9
887 179.45 radiation 1 43200 < th dose independent rect. 18 2
920 179.51 radiation 1 43200 > th dose independent rect. 18 11
926 179.52 radiation 1 43200 > th dose independent rect. 18 1
943 179.54 temperature 10 270 > th dose dependent sin 10 NA