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Os11g0121000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
177.64 | 0.626 | 5.04 | 0.367 | 1.13 | 1.4 | 0.034 | -1.79 | -0.00776 | 10 | 19.87 | 1487 | -- | -- |
180.21 | 0.625 | 4.97 | 0.806 | 1.29 | 1.51 | 0.171 | -- | 0.117 | 9.84 | 17.61 | 2149 | -- | -- |
177.64 | 0.621 | 5.04 | 0.358 | 1.13 | 1.4 | -- | -1.83 | -0.0102 | 10 | 20 | 1485 | -- | -- |
180.31 | 0.625 | 4.97 | 0.815 | 1.29 | 1.53 | -- | -- | 0.12 | 9.89 | 17.6 | 2160 | -- | -- |
244.97 | 0.733 | 5.03 | 0.697 | -- | 1.69 | -- | -2.2 | 0.0918 | -- | 18.9 | 1534 | -- | -- |
233.43 | 0.716 | 4.9 | 1.39 | 1.1 | -- | 0.0726 | -- | 0.452 | 9.84 | -- | -- | -- | -- |
233.45 | 0.716 | 4.9 | 1.4 | 1.1 | -- | -- | -- | 0.453 | 9.86 | -- | -- | -- | -- |
248.81 | 0.738 | 4.99 | 1.04 | -- | 1.7 | -- | -- | 0.191 | -- | 17.6 | 2160 | -- | -- |
195.48 | 0.651 | 4.98 | -- | 1.15 | 1.89 | -- | -- | 0.0849 | 10.1 | 15.2 | 3049 | -- | -- |
305.67 | 0.817 | 4.93 | 1.38 | -- | -- | -- | -- | 0.453 | -- | -- | -- | -- | -- |
284.87 | 0.79 | 4.94 | -- | 1.09 | -- | -- | -- | 0.297 | 9.76 | -- | -- | -- | -- |
270.4 | 0.766 | 5.04 | -- | -- | 1.93 | -- | -- | -0.0247 | -- | 10.97 | 5875 | -- | -- |
356.27 | 0.881 | 4.97 | -- | -- | -- | -- | -- | 0.299 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance![]() |
Histogram![]() ![]() |
Local optima within top1000 grid-points
rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
---|---|---|---|---|---|---|---|---|---|
1 | 173.86 | temperature | 25 | 270 | < th | dose dependent | rect. | 12 | 21 |
6 | 174.78 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 1 |
7 | 174.90 | temperature | 20 | 720 | > th | dose dependent | rect. | 18 | 14 |
8 | 174.90 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 15 |
16 | 175.17 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 6 |
18 | 175.20 | temperature | 30 | 720 | < th | dose dependent | sin | 14 | NA |
22 | 175.27 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 21 |
31 | 175.47 | temperature | 20 | 1440 | > th | dose dependent | sin | 13 | NA |
58 | 175.75 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 17 |
80 | 176.05 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 2 |
107 | 176.33 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 4 |
109 | 176.35 | temperature | 10 | 720 | > th | dose dependent | sin | 13 | NA |
112 | 176.36 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 7 |
132 | 176.52 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 14 |
146 | 176.57 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 12 |
209 | 177.06 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 10 |
295 | 177.58 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 6 |
304 | 177.62 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 4 |
319 | 177.70 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
334 | 177.77 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
335 | 177.77 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 23 |
360 | 177.88 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 4 |
414 | 178.14 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 6 |
444 | 178.23 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 1 |
450 | 178.26 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 1 |
457 | 178.27 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 1 |
463 | 178.29 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 1 |
469 | 178.30 | temperature | 30 | 270 | < th | dose dependent | sin | 11 | NA |
648 | 178.78 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 1 |
744 | 179.03 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
859 | 179.37 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
867 | 179.40 | wind | 5 | 43200 | < th | dose independent | rect. | 8 | 9 |
887 | 179.45 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 2 |
920 | 179.51 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
926 | 179.52 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
943 | 179.54 | temperature | 10 | 270 | > th | dose dependent | sin | 10 | NA |