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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0119700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cytochrome P450 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.09 (0.0313) R2 : 0.73
β1 : 1.81 (0.117) R2dD : 0.156 R2D : 0.217
β2 : 1.84 (0.0747) R2dC : 0.367 R2C : 0.324
β3 : 1.94 (0.119) R2dE : 0.18 R2E : 0.201
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.168 (0.0691) R2dN8 : 0.00513 R2N8 : 0.00899
σ : 0.578
deviance : 154.25
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_____
C
peak time of C : 1.4
E
wheather : temperature
threshold : 19.55
memory length : 476
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
150.58 0.577 9.11 1.63 1.82 1.95 -0.942 -0.746 0.124 1.44 20 495 -- --
150.8 0.572 9.1 1.77 1.81 1.93 -0.918 -- 0.164 1.39 19.36 497 -- --
154.12 0.578 9.11 1.69 1.83 1.97 -- -0.572 0.134 1.43 19.8 491 -- --
154.25 0.578 9.09 1.81 1.84 1.94 -- -- 0.168 1.4 19.55 476 -- --
273.65 0.77 9.11 1.51 -- 2.42 -- -0.408 0.0344 -- 19.6 923 -- --
216.96 0.691 9.04 2.25 1.78 -- -0.863 -- 0.51 24 -- -- -- --
220.18 0.695 9.03 2.28 1.79 -- -- -- 0.514 23.9 -- -- -- --
274.27 0.771 9.1 1.59 -- 2.42 -- -- 0.0663 -- 19.36 927 -- --
228.34 0.704 9.16 -- 1.7 2.85 -- -- -0.132 1.77 16.63 587 -- --
421.46 0.959 8.99 2.34 -- -- -- -- 0.538 -- -- -- -- --
357.63 0.885 9.09 -- 1.82 -- -- -- 0.26 24 -- -- -- --
329.27 0.845 9.16 -- -- 3.27 -- -- -0.198 -- 16.7 934 -- --
565.67 1.11 9.05 -- -- -- -- -- 0.279 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 148.32 temperature 20 270 > th dose dependent rect. 12 22
8 151.71 temperature 25 270 < th dose independent rect. 6 19
10 151.77 temperature 20 720 > th dose dependent rect. 20 22
15 152.16 temperature 20 1440 > th dose dependent rect. 21 12
24 152.33 temperature 20 1440 > th dose dependent sin 9 NA
39 152.46 temperature 20 1440 > th dose dependent rect. 1 7
67 152.82 temperature 20 1440 > th dose dependent rect. 4 3
80 153.01 temperature 20 720 > th dose dependent no NA NA
110 153.33 temperature 20 720 > th dose dependent rect. 16 23
112 153.35 temperature 20 720 > th dose dependent rect. 3 23
209 154.29 temperature 10 270 > th dose dependent rect. 23 23
212 154.31 temperature 30 270 < th dose dependent rect. 5 22
240 154.55 temperature 30 720 < th dose dependent rect. 1 23
257 154.67 temperature 30 720 < th dose dependent rect. 22 23
288 154.89 temperature 30 720 < th dose dependent rect. 11 23
311 155.05 temperature 30 720 < th dose dependent no NA NA
320 155.09 temperature 30 720 < th dose dependent rect. 19 23
331 155.15 temperature 30 720 < th dose dependent rect. 15 23
332 155.15 temperature 30 720 < th dose dependent rect. 17 23
340 155.21 temperature 30 720 < th dose dependent rect. 8 23
345 155.26 temperature 20 1440 > th dose dependent rect. 22 1
471 155.93 temperature 25 1440 < th dose dependent rect. 2 1
551 156.22 temperature 30 1440 < th dose dependent rect. 17 17
560 156.25 temperature 30 1440 < th dose dependent sin 10 NA
626 156.41 temperature 25 1440 < th dose independent rect. 16 6
641 156.43 temperature 30 1440 < th dose dependent rect. 17 12
830 156.78 temperature 25 1440 > th dose independent rect. 16 6
874 156.86 temperature 25 1440 > th dose independent rect. 15 8