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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0118500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : NPH3 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.16 (0.0396) R2 : 0.0604
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.503 (0.0942) R2dC : 0.0588 R2C : 0.0579
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0819 (0.0833) R2dN8 : 0.00257 R2N8 : 0.0016
σ : 0.747
deviance : 254.86
__
_____
C
peak time of C : 11.7
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
239.79 0.728 3.16 -0.0303 0.936 0.986 0.161 -1.45 0.0982 13.1 37.62 15 -- --
242 0.73 3.16 -0.0774 0.953 1.02 0.826 -- 0.0901 13.1 37.62 15 -- --
239.85 0.721 3.15 -0.0212 0.937 0.99 -- -1.6 0.0996 13.1 37.84 15 -- --
244.75 0.729 3.16 -0.045 0.913 0.905 -- -- 0.0959 13.1 40.51 15 -- --
263.99 0.757 3.18 -0.0217 -- -0.0169 -- -1.29 0.0797 -- 78.01 50 -- --
253.5 0.746 3.16 -0.0781 0.504 -- 0.55 -- 0.0738 11.9 -- -- -- --
254.77 0.747 3.16 -0.057 0.502 -- -- -- 0.0756 11.7 -- -- -- --
269.79 0.768 3.17 -0.0668 -- -0.116 -- -- 0.0598 -- 70 5 -- --
244.8 0.729 3.15 -- 0.914 0.904 -- -- 0.1 13.1 39.89 15 -- --
270.64 0.769 3.17 -0.0715 -- -- -- -- 0.0694 -- -- -- -- --
254.86 0.747 3.16 -- 0.503 -- -- -- 0.0819 11.7 -- -- -- --
253.17 0.741 3.17 -- -- 0.955 -- -- 0.0961 -- -31.28 1008 -- --
270.77 0.768 3.17 -- -- -- -- -- 0.0774 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 233.82 temperature 20.0 90 < th dose independent rect. 2 10
4 234.35 temperature 20.0 90 < th dose dependent rect. 2 9
14 235.39 radiation 1.0 90 < th dose dependent rect. 5 10
18 236.34 humidity 90.0 10 < th dose dependent rect. 7 11
19 236.35 precipitation 0.1 720 > th dose independent rect. 24 2
20 236.35 precipitation 0.1 720 > th dose independent rect. 21 5
21 236.35 precipitation 0.1 720 > th dose dependent rect. 24 2
22 236.35 precipitation 0.1 720 > th dose dependent rect. 21 5
24 236.47 humidity 90.0 10 < th dose dependent rect. 19 23
25 236.48 temperature 20.0 90 < th dose independent rect. 2 20
38 236.85 temperature 20.0 90 < th dose dependent rect. 2 20
42 236.90 humidity 80.0 10 > th dose dependent sin 1 NA
44 237.03 radiation 1.0 90 < th dose independent rect. 5 10
47 237.13 temperature 20.0 90 < th dose independent rect. 2 15
54 237.28 humidity 60.0 10 > th dose dependent sin 1 NA
65 237.33 humidity 80.0 10 > th dose dependent rect. 6 8
75 237.48 humidity 90.0 10 < th dose independent rect. 7 11
78 237.51 temperature 20.0 90 < th dose independent rect. 2 17
90 237.68 temperature 20.0 10 < th dose dependent rect. 3 9
105 237.95 humidity 90.0 270 < th dose independent rect. 6 15
111 238.01 humidity 90.0 10 > th dose dependent rect. 6 13
114 238.03 humidity 90.0 10 < th dose dependent rect. 1 17
126 238.15 temperature 20.0 90 < th dose dependent rect. 2 17
130 238.18 radiation 1.0 90 < th dose dependent rect. 5 12
133 238.19 humidity 90.0 10 < th dose dependent sin 2 NA
154 238.39 temperature 20.0 90 < th dose independent sin 4 NA
166 238.47 radiation 1.0 90 < th dose independent rect. 5 12
180 238.63 humidity 60.0 1440 > th dose dependent rect. 11 1
183 238.67 temperature 25.0 10 < th dose dependent rect. 2 16
184 238.67 humidity 60.0 10 > th dose dependent rect. 17 22
190 238.69 humidity 90.0 10 < th dose dependent rect. 7 20
222 238.89 humidity 50.0 10 > th dose dependent rect. 9 23
231 238.92 humidity 90.0 10 < th dose dependent rect. 7 17
236 238.94 temperature 15.0 1440 > th dose independent rect. 6 14
271 239.13 humidity 90.0 270 < th dose independent sin 1 NA
301 239.23 humidity 90.0 1440 < th dose dependent rect. 11 1
311 239.31 humidity 90.0 270 < th dose independent rect. 6 11
325 239.36 humidity 60.0 10 > th dose dependent rect. 24 19
328 239.38 humidity 80.0 90 > th dose dependent rect. 5 9
337 239.41 temperature 20.0 270 < th dose dependent rect. 2 2
342 239.45 temperature 20.0 90 < th dose dependent rect. 5 6
350 239.48 humidity 60.0 10 > th dose dependent rect. 24 15
366 239.53 humidity 90.0 720 > th dose independent rect. 5 18
395 239.64 humidity 60.0 10 > th dose dependent rect. 21 23
415 239.75 humidity 90.0 270 > th dose independent sin 1 NA
416 239.75 humidity 80.0 10 > th dose independent sin 3 NA
424 239.78 humidity 90.0 270 > th dose dependent rect. 5 13
445 239.85 humidity 90.0 30 > th dose independent sin 0 NA
502 240.02 radiation 1.0 90 < th dose independent rect. 5 14
514 240.05 humidity 50.0 10 > th dose dependent no NA NA
533 240.11 humidity 80.0 10 > th dose independent rect. 1 14
534 240.11 temperature 25.0 10 < th dose dependent sin 4 NA
537 240.11 humidity 90.0 10 < th dose dependent rect. 7 5
554 240.16 humidity 90.0 10 > th dose independent rect. 6 13
562 240.17 humidity 90.0 10 < th dose dependent rect. 15 23
580 240.22 humidity 90.0 10 < th dose independent sin 23 NA
585 240.23 temperature 20.0 270 < th dose independent rect. 2 2
626 240.31 radiation 1.0 90 < th dose dependent rect. 7 6
638 240.33 humidity 70.0 1440 > th dose independent rect. 15 21
649 240.35 humidity 90.0 10 < th dose dependent rect. 1 23
650 240.36 radiation 20.0 4320 < th dose independent rect. 20 10
654 240.37 temperature 20.0 90 > th dose independent sin 3 NA
657 240.37 humidity 90.0 10 < th dose dependent no NA NA
665 240.39 temperature 15.0 4320 > th dose independent rect. 11 2
683 240.42 humidity 60.0 10 > th dose dependent rect. 23 23
694 240.45 temperature 20.0 30 < th dose dependent rect. 3 5
780 240.61 humidity 70.0 1440 < th dose independent rect. 14 22
940 240.88 humidity 90.0 270 > th dose independent rect. 5 13
944 240.88 humidity 60.0 30 > th dose dependent rect. 5 14
954 240.90 temperature 15.0 4320 < th dose dependent rect. 9 8
971 240.91 humidity 60.0 10 > th dose dependent rect. 13 23
984 240.94 temperature 20.0 90 > th dose independent rect. 3 10