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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0118400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.36 (0.0524) R2 : 0.686
β1 : -1.9 (0.193) R2dD : 0.0706 R2D : 0.0535
β2 : 7.44 (0.307) R2dC : 2.47 R2C : -1.56
β3 : -5.88 (0.274) R2dE : 1.95 R2E : -2.08
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 3.56 (0.443) R2dD*E : 0.045 R2D*E : -0.0245
γ1 : 1.32 (0.112) R2dN8 : 0.13 R2N8 : 0.166
σ : 0.979
deviance : 441.53
__
_____
C
peak time of C : 12.7
E
wheather : radiation
threshold : 1.648
memory length : 265
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 6.98
open length of G : 7.93

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
441.91 0.988 5.36 -1.92 7.41 -5.84 -0.544 3.97 1.31 12.7 0.9381 264 7 7.93
464.68 1 5.34 -1.77 6.91 -5.5 1.86 -- 1.33 12.5 1.649 257 7 7.71
441.53 0.979 5.36 -1.9 7.44 -5.88 -- 3.56 1.32 12.7 1.648 265 6.98 7.93
502.12 1.04 5.36 -1.84 6.94 -5.41 -- -- 1.32 12.6 1.35 253 7.03 7.73
982.46 1.47 5.41 -1.97 -- 0.637 -- 2.29 1.56 -- 1.648 265 6.98 7.93
879.34 1.39 5.37 -1.94 1.54 -- 2.75 -- 1.58 11.3 -- -- -- --
911.13 1.41 5.37 -1.83 1.54 -- -- -- 1.58 11 -- -- -- --
815.58 1.33 5.06 -1.14 -- 1.87 -- -- 1.93 -- -82.94 409 0.235 17.7
584.37 1.13 5.34 -- 6.95 -5.36 -- -- 1.43 12.6 1.5 246 7.05 7.92
1058.45 1.52 5.41 -1.86 -- -- -- -- 1.57 -- -- -- -- --
999.14 1.48 5.32 -- 1.55 -- -- -- 1.79 11.1 -- -- -- --
808.51 1.32 5.37 -- -- 2.34 -- -- 1.71 -- -70.62 347 0.217 19.6
1149.93 1.58 5.36 -- -- -- -- -- 1.78 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 447.03 radiation 1.0 270 > th dose independent rect. 7 8
3 469.50 precipitation 0.1 270 < th dose independent rect. 7 8
4 469.50 precipitation 0.1 270 < th dose dependent rect. 7 8
5 469.79 radiation 40.0 270 < th dose independent rect. 15 16
6 471.47 temperature 10.0 270 > th dose independent rect. 7 8
7 471.47 atmosphere 1015.0 270 < th dose independent rect. 7 8
8 471.47 temperature 10.0 270 > th dose independent rect. 15 16
9 472.67 atmosphere 995.0 270 > th dose independent rect. 7 8
10 472.93 wind 9.0 270 < th dose independent rect. 7 8
11 473.68 wind 9.0 270 < th dose independent rect. 15 16
13 478.99 radiation 1.0 270 < th dose dependent rect. 18 9
14 480.39 radiation 1.0 270 < th dose independent rect. 18 9
16 483.66 precipitation 0.1 270 < th dose independent rect. 15 16
17 483.66 precipitation 0.1 270 < th dose dependent rect. 15 16
18 483.85 temperature 10.0 270 > th dose independent rect. 19 8
19 483.85 temperature 30.0 270 < th dose independent rect. 19 8
20 483.85 humidity 50.0 270 > th dose independent rect. 19 8
21 483.85 atmosphere 995.0 270 > th dose independent rect. 19 8
27 483.85 temperature 10.0 270 > th dose independent rect. 3 16
28 483.85 atmosphere 1015.0 270 < th dose independent rect. 3 16
37 484.71 wind 9.0 270 < th dose independent rect. 19 8
60 488.83 precipitation 0.1 270 < th dose independent rect. 19 8
61 488.83 precipitation 0.1 270 < th dose dependent rect. 19 8
66 492.52 wind 9.0 270 < th dose independent rect. 3 16
67 493.18 radiation 30.0 30 < th dose dependent rect. 5 15
68 494.63 radiation 20.0 30 < th dose independent rect. 5 15
69 494.96 precipitation 0.1 270 < th dose independent rect. 3 16
70 494.96 precipitation 0.1 270 < th dose dependent rect. 3 16
80 503.05 atmosphere 995.0 270 > th dose independent rect. 15 16
85 510.77 humidity 50.0 270 > th dose independent rect. 7 8
88 512.43 humidity 50.0 30 > th dose dependent rect. 5 15
94 514.19 radiation 1.0 30 < th dose dependent rect. 20 9
101 514.87 temperature 10.0 30 > th dose independent rect. 20 9
102 514.87 temperature 30.0 30 < th dose independent rect. 20 9
103 514.87 humidity 50.0 30 > th dose independent rect. 20 9
106 514.87 atmosphere 995.0 30 > th dose independent rect. 20 9
107 514.87 radiation 1.0 30 < th dose independent rect. 20 9
112 514.87 temperature 10.0 30 > th dose independent rect. 5 15
114 514.87 atmosphere 1015.0 30 < th dose independent rect. 5 15
115 515.27 wind 9.0 30 < th dose independent rect. 20 9
120 516.42 wind 1.0 270 > th dose independent rect. 7 8
121 516.54 precipitation 0.1 30 < th dose independent rect. 20 9
122 516.54 precipitation 0.1 30 < th dose dependent rect. 20 9
124 517.81 precipitation 0.1 30 < th dose independent rect. 5 15
125 517.81 precipitation 0.1 30 < th dose dependent rect. 5 15
180 522.09 radiation 20.0 270 < th dose independent rect. 2 6
209 523.00 radiation 40.0 90 < th dose dependent rect. 15 18
212 523.82 radiation 20.0 90 < th dose independent rect. 15 18
222 524.78 atmosphere 995.0 270 > th dose independent rect. 3 16
226 525.19 wind 9.0 30 < th dose independent rect. 5 15
259 529.18 radiation 10.0 270 < th dose independent rect. 3 4
273 531.63 temperature 10.0 270 > th dose dependent rect. 3 4
276 531.96 radiation 30.0 270 < th dose dependent rect. 3 4
280 532.26 atmosphere 1010.0 270 < th dose independent rect. 3 4
282 532.33 wind 1.0 270 > th dose independent rect. 19 8
285 532.64 radiation 40.0 90 < th dose independent rect. 4 16
286 532.69 humidity 70.0 270 > th dose independent rect. 3 4
291 533.04 radiation 40.0 270 < th dose dependent rect. 2 6
295 533.54 humidity 70.0 270 > th dose independent rect. 2 6
297 533.84 atmosphere 1015.0 270 < th dose independent rect. 19 8
300 534.17 humidity 50.0 10 > th dose independent rect. 5 15
310 535.53 temperature 10.0 270 > th dose dependent rect. 2 6
317 536.38 wind 9.0 270 < th dose independent rect. 3 4
318 536.38 temperature 10.0 270 > th dose independent rect. 3 4
320 536.38 temperature 30.0 270 < th dose independent rect. 3 4
321 536.38 humidity 50.0 270 > th dose independent rect. 3 4
323 536.38 atmosphere 995.0 270 > th dose independent rect. 3 4
326 536.38 temperature 10.0 270 > th dose independent rect. 7 20
329 536.97 atmosphere 995.0 30 > th dose independent rect. 5 15
335 537.38 wind 9.0 270 < th dose independent rect. 7 20
347 538.57 humidity 50.0 270 > th dose dependent rect. 3 4
370 540.30 atmosphere 1010.0 270 < th dose independent rect. 2 6
378 541.33 precipitation 0.1 270 < th dose independent rect. 3 4
379 541.33 precipitation 0.1 270 < th dose dependent rect. 3 4
403 543.83 radiation 40.0 270 < th dose dependent rect. 15 16
408 544.67 precipitation 0.1 270 < th dose independent rect. 7 20
409 544.67 precipitation 0.1 270 < th dose dependent rect. 7 20
416 545.20 wind 9.0 270 < th dose dependent rect. 19 7
419 545.26 wind 9.0 270 < th dose independent rect. 2 6
420 545.26 temperature 10.0 270 > th dose independent rect. 2 6
422 545.26 temperature 30.0 270 < th dose independent rect. 2 6
423 545.26 humidity 50.0 270 > th dose independent rect. 2 6
425 545.26 atmosphere 995.0 270 > th dose independent rect. 2 6
427 545.26 temperature 10.0 270 > th dose independent rect. 8 18
434 545.59 temperature 10.0 270 > th dose dependent rect. 4 2
440 546.57 humidity 50.0 270 > th dose dependent rect. 2 6
442 546.85 wind 9.0 270 < th dose independent rect. 8 18
446 547.32 wind 9.0 30 < th dose dependent rect. 20 9
451 547.65 humidity 50.0 30 > th dose dependent rect. 20 9
479 548.29 wind 9.0 270 < th dose dependent rect. 3 4
480 548.42 temperature 10.0 270 > th dose dependent rect. 19 7
482 548.51 radiation 10.0 270 < th dose independent rect. 4 2
501 549.10 atmosphere 1015.0 30 < th dose independent rect. 20 9
516 549.78 radiation 1.0 90 < th dose dependent sin 11 NA
522 550.25 precipitation 0.1 270 < th dose independent rect. 2 6
523 550.25 precipitation 0.1 270 < th dose dependent rect. 2 6
545 551.93 temperature 30.0 270 < th dose independent rect. 7 7
592 553.68 wind 9.0 270 < th dose dependent rect. 8 18
599 554.19 humidity 50.0 270 > th dose independent rect. 14 17
654 556.85 atmosphere 995.0 270 > th dose independent rect. 7 20
669 557.66 humidity 90.0 270 < th dose independent rect. 7 7
723 558.92 temperature 10.0 1440 > th dose independent rect. 21 8
726 558.92 temperature 30.0 1440 < th dose independent rect. 21 8
730 558.92 humidity 50.0 1440 > th dose independent rect. 21 8
736 558.92 atmosphere 995.0 1440 > th dose independent rect. 21 8
737 558.92 radiation 20.0 1440 < th dose independent rect. 21 8
750 558.92 temperature 10.0 1440 > th dose independent rect. 5 16
773 560.05 humidity 50.0 270 > th dose independent rect. 3 16
884 563.17 precipitation 0.1 270 < th dose independent rect. 4 2
885 563.17 precipitation 0.1 270 < th dose dependent rect. 4 2
982 567.38 wind 9.0 270 < th dose dependent rect. 4 2