Os11g0118300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NPH3 domain containing protein.
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Os11g0118300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : NPH3 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 184.45 | 0.638 | 12.1 | 1.52 | 3.3 | 3.7 | -0.992 | -0.12 | 1.38 | 8.12 | 29.55 | 268 | 11 | 18 |
| 184.37 | 0.632 | 12.1 | 1.51 | 3.29 | 3.69 | -0.924 | -- | 1.38 | 8.08 | 29.25 | 264 | 11 | 18 |
| 186.36 | 0.636 | 12.1 | 1.42 | 3.25 | 3.62 | -- | 0.509 | 1.37 | 8 | 28.92 | 266 | 11 | 18 |
| 186.79 | 0.637 | 12.1 | 1.47 | 3.26 | 3.58 | -- | -- | 1.38 | 7.99 | 28.96 | 264 | 11 | 18 |
| 308.81 | 0.818 | 12 | 2.26 | -- | 6.87 | -- | -1.38 | 1.57 | -- | 39.21 | 872 | 15 | 14.3 |
| 302.22 | 0.815 | 12.2 | 0.881 | 3.38 | -- | 0.105 | -- | 0.87 | 6.35 | -- | -- | -- | -- |
| 302.25 | 0.814 | 12.2 | 0.882 | 3.38 | -- | -- | -- | 0.869 | 6.35 | -- | -- | -- | -- |
| 253.5 | 0.742 | 12.2 | 1.61 | -- | 5.32 | -- | -- | 1.27 | -- | 48.78 | 810 | 15.5 | 15.1 |
| 238.9 | 0.72 | 12.1 | -- | 3.29 | 3.07 | -- | -- | 1.13 | 7.77 | 28.93 | 265 | 11.7 | 17.3 |
| 896.23 | 1.4 | 12.3 | 0.971 | -- | -- | -- | -- | 0.942 | -- | -- | -- | -- | -- |
| 322.77 | 0.84 | 12.2 | -- | 3.39 | -- | -- | -- | 0.771 | 6.34 | -- | -- | -- | -- |
| 288.12 | 0.791 | 12.3 | -- | -- | 4.67 | -- | -- | 0.992 | -- | 70.61 | 864 | 15.2 | 15.2 |
| 921.12 | 1.42 | 12.3 | -- | -- | -- | -- | -- | 0.834 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 184.80 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 18 |
| 14 | 198.54 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 19 |
| 39 | 205.28 | temperature | 30 | 720 | < th | dose dependent | rect. | 10 | 12 |
| 65 | 208.62 | temperature | 20 | 720 | > th | dose dependent | rect. | 11 | 12 |
| 69 | 208.84 | temperature | 25 | 720 | > th | dose independent | rect. | 12 | 9 |
| 79 | 209.57 | temperature | 25 | 720 | > th | dose independent | sin | 20 | NA |
| 82 | 209.68 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 11 |
| 106 | 211.19 | temperature | 30 | 720 | < th | dose dependent | sin | 20 | NA |
| 110 | 211.41 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 15 |
| 125 | 211.94 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 8 |
| 135 | 212.27 | temperature | 20 | 720 | > th | dose dependent | sin | 19 | NA |
| 162 | 212.91 | temperature | 25 | 720 | < th | dose independent | sin | 20 | NA |
| 189 | 213.74 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 22 |
| 303 | 216.57 | temperature | 20 | 90 | > th | dose dependent | sin | 11 | NA |
| 404 | 218.58 | temperature | 30 | 270 | < th | dose dependent | sin | 14 | NA |
| 411 | 218.66 | temperature | 30 | 90 | < th | dose dependent | sin | 11 | NA |
| 459 | 219.50 | temperature | 25 | 270 | < th | dose independent | rect. | 11 | 17 |
| 506 | 220.05 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 9 |
| 532 | 220.44 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 570 | 220.91 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 588 | 221.23 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 16 |
| 706 | 223.12 | humidity | 50 | 14400 | > th | dose independent | rect. | 17 | 16 |
| 729 | 223.42 | temperature | 25 | 10 | < th | dose dependent | rect. | 8 | 23 |
| 734 | 223.49 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 748 | 223.66 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 775 | 224.06 | humidity | 50 | 14400 | < th | dose independent | rect. | 17 | 17 |
| 777 | 224.10 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 781 | 224.13 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 790 | 224.17 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 800 | 224.30 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 18 |
| 803 | 224.36 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 805 | 224.38 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 809 | 224.39 | humidity | 50 | 14400 | < th | dose dependent | rect. | 16 | 18 |
| 813 | 224.45 | humidity | 60 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 833 | 224.53 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 855 | 224.71 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 971 | 225.88 | humidity | 50 | 14400 | < th | dose dependent | rect. | 16 | 2 |