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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0117600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to WRKY transcription factor 50 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.92 (0.141) R2 : 0.558
β1 : 3.18 (0.497) R2dD : 0.094 R2D : -0.298
β2 : 0.563 (0.213) R2dC : 0.00693 R2C : 0.00505
β3 : -14.3 (0.988) R2dE : 1.15 R2E : -0.704
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -46.9 (4.47) R2dD*E : 0.631 R2D*E : -0.4
γ1 : 3.69 (0.217) R2dN8 : 0.482 R2N8 : 0.127
σ : 1.67
deviance : 1293.02
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_____
C
peak time of C : 0.759
E
wheather : radiation
threshold : 1.298
memory length : 4318
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 4.01
open length of G : 1.02

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1296.47 1.69 5.92 2.95 0.68 -14 -0.142 -47.2 3.62 1.06 1.161 4320 4 0.998
1837.57 2.01 5.03 -2.38 0.647 1.14 -0.708 -- 3.01 0.0781 1.882 4311 4 1.23
1293.02 1.67 5.92 3.18 0.563 -14.3 -- -46.9 3.69 0.759 1.298 4318 4.01 1.02
1818.62 1.99 4.95 -2.78 0.802 1.33 -- -- 2.93 23.8 10.01 5782 4.02 1.2
1313.25 1.69 5.92 3.18 -- -14.3 -- -46.4 3.69 -- 1.298 4318 4.01 1.02
1856.89 2.02 5.02 -2.32 0.791 -- 0.0972 -- 3.05 1.81 -- -- -- --
1856.91 2.02 5.02 -2.32 0.79 -- -- -- 3.05 1.73 -- -- -- --
1815.08 1.98 5.06 -3.08 -- 2.39 -- -- 2.83 -- 10.01 5794 3.75 1.47
1975.27 2.07 4.95 -- 0.521 1.3 -- -- 3.31 23.5 29.9 5860 3.82 0.649
1894.88 2.03 5.01 -2.29 -- -- -- -- 3.07 -- -- -- -- --
1998.52 2.09 4.96 -- 0.748 -- -- -- 3.31 1.64 -- -- -- --
1994.13 2.08 4.95 -- -- 1.23 -- -- 3.33 -- 56.37 5860 3.82 0.581
2032.7 2.1 4.95 -- -- -- -- -- 3.32 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1311.35 radiation 1 43200 < th dose independent rect. 18 2
4 1311.59 radiation 1 43200 < th dose independent rect. 18 9
12 1316.01 atmosphere 1015 43200 > th dose dependent rect. 1 1
13 1318.16 radiation 1 4320 < th dose dependent rect. 4 1
14 1319.16 radiation 30 14400 < th dose independent rect. 20 11
15 1320.65 atmosphere 1015 43200 > th dose independent rect. 15 1
25 1320.77 radiation 1 4320 < th dose dependent rect. 2 3
26 1320.81 atmosphere 1015 43200 < th dose independent rect. 15 1
30 1322.07 radiation 30 14400 < th dose independent rect. 18 13
39 1323.48 radiation 1 4320 < th dose dependent rect. 24 6
49 1325.18 radiation 1 4320 < th dose dependent rect. 19 11
53 1327.85 radiation 1 43200 < th dose dependent rect. 24 5
54 1327.93 radiation 1 43200 < th dose dependent rect. 4 1
67 1330.55 radiation 1 43200 < th dose dependent rect. 19 10
68 1330.82 radiation 1 43200 > th dose independent rect. 18 1
81 1332.32 atmosphere 1015 43200 < th dose independent rect. 10 4
82 1332.42 atmosphere 1015 43200 > th dose independent rect. 10 4
83 1332.64 atmosphere 1015 43200 < th dose independent rect. 11 2
85 1333.56 atmosphere 1015 43200 > th dose independent rect. 11 2
99 1337.36 radiation 1 4320 < th dose dependent rect. 18 13
100 1337.37 radiation 30 14400 < th dose independent rect. 2 5
102 1337.51 atmosphere 1015 43200 > th dose dependent rect. 19 1
114 1340.89 wind 5 43200 < th dose independent rect. 14 3
129 1342.89 wind 5 43200 > th dose independent rect. 14 3
132 1343.07 atmosphere 1015 43200 < th dose independent rect. 1 3
138 1344.48 radiation 1 43200 > th dose independent rect. 6 3
139 1344.58 radiation 1 43200 < th dose independent rect. 6 3
145 1345.08 radiation 1 43200 < th dose dependent rect. 24 11
149 1345.11 radiation 1 43200 < th dose dependent rect. 4 7
158 1345.41 atmosphere 1015 43200 > th dose independent rect. 1 3
161 1345.85 wind 5 43200 < th dose independent rect. 12 7
191 1346.51 radiation 1 43200 < th dose dependent sin 5 NA
246 1347.15 radiation 1 43200 > th dose independent rect. 6 8
248 1347.20 radiation 1 43200 < th dose independent rect. 6 8
274 1347.88 atmosphere 1015 43200 > th dose dependent rect. 14 1
275 1347.89 radiation 1 43200 < th dose dependent rect. 6 23
280 1348.09 radiation 1 43200 > th dose independent rect. 7 1
283 1348.20 radiation 1 43200 < th dose independent rect. 7 1
322 1349.15 radiation 1 43200 < th dose dependent rect. 6 20
335 1349.38 radiation 1 43200 < th dose dependent rect. 18 2
337 1349.41 radiation 1 43200 < th dose dependent rect. 15 20
351 1349.66 wind 5 43200 > th dose independent rect. 12 7
372 1350.04 radiation 1 43200 < th dose dependent rect. 15 22
403 1350.74 radiation 1 43200 < th dose independent rect. 18 17
420 1351.29 radiation 1 43200 < th dose dependent rect. 12 23
457 1351.94 radiation 1 43200 < th dose dependent no NA NA
467 1351.94 radiation 1 43200 < th dose dependent rect. 4 22
496 1352.12 radiation 20 14400 > th dose dependent rect. 6 1
512 1352.30 radiation 1 43200 < th dose independent rect. 18 19
538 1352.87 wind 3 43200 > th dose dependent rect. 14 1
539 1352.90 humidity 90 43200 > th dose dependent rect. 8 1
582 1354.03 atmosphere 1015 43200 < th dose dependent rect. 18 1
585 1354.09 radiation 1 14400 < th dose dependent rect. 9 4
601 1354.54 radiation 1 43200 < th dose independent rect. 7 19
610 1354.69 wind 9 43200 < th dose dependent rect. 14 1
615 1354.95 radiation 1 43200 < th dose dependent rect. 6 1
616 1355.06 temperature 15 43200 > th dose independent rect. 10 4
630 1355.23 atmosphere 995 43200 > th dose dependent rect. 18 1
633 1355.25 radiation 1 43200 > th dose independent rect. 18 17
649 1355.72 radiation 1 43200 < th dose independent rect. 18 22
657 1355.92 temperature 15 43200 > th dose independent rect. 10 1
658 1355.92 temperature 15 43200 < th dose independent rect. 10 1
676 1356.36 temperature 15 43200 > th dose independent rect. 13 1
679 1356.39 temperature 15 43200 < th dose independent rect. 13 1
684 1356.52 radiation 1 43200 > th dose independent rect. 18 19
698 1356.82 atmosphere 1005 43200 < th dose independent rect. 16 11
744 1357.23 temperature 15 43200 < th dose independent rect. 10 4
746 1357.28 radiation 1 43200 < th dose independent sin 3 NA
767 1357.63 atmosphere 1015 43200 < th dose dependent rect. 3 1
770 1357.69 atmosphere 1015 43200 < th dose dependent rect. 1 3
772 1357.70 radiation 1 43200 < th dose dependent rect. 15 4
776 1357.73 radiation 1 43200 < th dose dependent rect. 15 11
783 1357.76 radiation 1 43200 < th dose independent rect. 24 11
810 1357.86 atmosphere 995 43200 > th dose dependent rect. 24 2
840 1357.97 atmosphere 1015 43200 < th dose dependent rect. 18 13
846 1357.99 atmosphere 1015 43200 < th dose dependent rect. 18 11
861 1358.01 atmosphere 1015 43200 < th dose dependent rect. 18 16
865 1358.03 radiation 1 43200 < th dose independent rect. 24 16
895 1358.12 radiation 1 43200 > th dose independent sin 3 NA
936 1358.29 atmosphere 1005 43200 > th dose independent rect. 16 11
973 1358.46 atmosphere 995 43200 > th dose dependent rect. 18 10
981 1358.49 atmosphere 1015 43200 < th dose dependent sin 10 NA
985 1358.51 atmosphere 1015 43200 < th dose dependent rect. 21 10
998 1358.53 atmosphere 1015 43200 < th dose dependent rect. 21 8