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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0117500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : DNA-binding WRKY domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.97 (0.0679) R2 : 0.403
β1 : -4.01 (0.377) R2dD : 0.384 R2D : -0.0418
β2 : 0.81 (0.167) R2dC : 0.0314 R2C : 0.0257
β3 : -1.52 (0.237) R2dE : 0.0607 R2E : 0.101
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 8.97 (1.06) R2dD*E : 0.235 R2D*E : -0.17
γ1 : 0.659 (0.156) R2dN8 : 0.039 R2N8 : 0.116
σ : 1.22
deviance : 686.18
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_____
C
peak time of C : 7.77
E
wheather : radiation
threshold : 0.9959
memory length : 4320
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 19
open length of G : 11

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
685.28 1.23 3.97 -4.03 0.811 -1.53 0.586 9.05 0.657 7.7 0.9978 4321 19 11
773.19 1.3 3.97 -2.35 0.804 -3.17 0.476 -- 0.66 9.15 0.8564 4304 19.9 13
686.18 1.22 3.97 -4.01 0.81 -1.52 -- 8.97 0.659 7.77 0.9959 4320 19 11
739.35 1.27 3.9 -2.29 1.06 -3.23 -- -- 0.992 9.39 0.15 4264 20 14.8
720.73 1.25 3.97 -3.91 -- -1.57 -- 8.91 0.695 -- 0.9441 4326 19 11
861.9 1.38 3.77 -1.39 0.797 -- 0.555 -- 1.43 7.89 -- -- -- --
862.8 1.38 3.77 -1.37 0.797 -- -- -- 1.43 7.91 -- -- -- --
766.14 1.29 3.97 -2.19 -- -3.34 -- -- 0.773 -- 0.1799 4345 18.6 13.2
750.38 1.28 3.81 -- 1.22 -2.88 -- -- 1.79 10.4 0.3685 4300 20.6 8.5
897.33 1.4 3.79 -1.36 -- -- -- -- 1.44 -- -- -- -- --
912.28 1.41 3.74 -- 0.788 -- -- -- 1.58 8.04 -- -- -- --
756.86 1.28 3.81 -- -- -3.36 -- -- 1.77 -- 0.54 4320 20.6 8.56
946.24 1.44 3.76 -- -- -- -- -- 1.59 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 671.67 radiation 40.0 43200 > th dose independent rect. 7 1
17 671.67 radiation 40.0 43200 > th dose dependent rect. 7 1
33 677.87 radiation 1.0 43200 < th dose dependent rect. 23 6
34 677.88 radiation 1.0 43200 < th dose dependent rect. 19 10
39 678.45 precipitation 0.1 43200 < th dose independent rect. 10 3
40 678.45 precipitation 0.1 43200 < th dose dependent rect. 10 3
42 679.30 precipitation 0.1 43200 > th dose independent rect. 10 3
43 679.30 precipitation 0.1 43200 > th dose dependent rect. 10 3
44 679.47 atmosphere 995.0 43200 > th dose independent rect. 5 4
45 679.52 atmosphere 995.0 43200 < th dose independent rect. 4 6
46 679.54 atmosphere 995.0 43200 < th dose dependent rect. 1 9
47 679.66 radiation 1.0 43200 < th dose dependent rect. 4 1
50 679.72 atmosphere 995.0 43200 < th dose dependent rect. 3 6
51 679.78 atmosphere 995.0 43200 < th dose independent rect. 3 8
53 679.92 atmosphere 995.0 43200 < th dose independent rect. 2 10
55 679.95 atmosphere 995.0 43200 > th dose independent rect. 4 6
56 679.95 atmosphere 995.0 43200 > th dose independent rect. 3 8
59 680.00 atmosphere 995.0 43200 < th dose independent rect. 1 12
60 680.04 atmosphere 995.0 43200 > th dose independent rect. 2 10
62 680.05 atmosphere 995.0 43200 < th dose independent rect. 24 14
80 680.47 atmosphere 995.0 43200 < th dose dependent sin 7 NA
97 680.75 atmosphere 995.0 43200 < th dose dependent rect. 4 4
118 681.18 atmosphere 995.0 43200 > th dose independent rect. 24 14
145 681.88 wind 1.0 43200 < th dose independent rect. 19 1
168 682.45 wind 1.0 43200 < th dose dependent rect. 19 1
189 683.05 atmosphere 995.0 43200 > th dose independent rect. 19 19
194 683.20 wind 1.0 43200 < th dose dependent rect. 21 1
231 684.12 atmosphere 995.0 43200 < th dose independent sin 7 NA
260 685.61 wind 1.0 43200 > th dose independent rect. 19 1
263 685.80 radiation 1.0 4320 < th dose dependent rect. 19 11
267 685.93 radiation 1.0 4320 < th dose dependent rect. 23 7
275 686.26 radiation 1.0 4320 < th dose dependent rect. 4 2
291 686.74 atmosphere 995.0 43200 > th dose independent sin 7 NA
329 688.26 wind 1.0 43200 < th dose dependent rect. 19 3
335 688.53 wind 1.0 14400 < th dose dependent rect. 18 8
340 688.65 wind 1.0 14400 < th dose dependent rect. 24 1
346 688.76 radiation 1.0 43200 < th dose independent rect. 18 8
351 688.89 radiation 1.0 43200 < th dose independent rect. 18 2
369 689.25 radiation 1.0 43200 < th dose independent rect. 12 5
376 689.39 atmosphere 995.0 43200 > th dose independent rect. 1 1
377 689.40 radiation 1.0 43200 > th dose independent rect. 12 5
403 690.13 atmosphere 995.0 43200 < th dose independent rect. 1 1
430 690.13 atmosphere 995.0 43200 < th dose dependent rect. 1 1
467 690.28 radiation 1.0 14400 > th dose independent rect. 18 1
496 690.66 radiation 1.0 43200 < th dose independent rect. 13 3
503 690.72 radiation 1.0 43200 > th dose independent rect. 13 3
533 691.20 wind 1.0 43200 < th dose independent rect. 21 1
619 693.46 radiation 10.0 43200 < th dose independent rect. 10 1
631 693.74 radiation 1.0 43200 < th dose dependent rect. 13 2
639 694.02 radiation 1.0 43200 < th dose dependent rect. 12 5
650 694.55 humidity 90.0 43200 > th dose independent rect. 12 1
666 695.28 radiation 10.0 1440 < th dose independent rect. 10 1
681 696.06 humidity 90.0 43200 > th dose dependent rect. 12 1
687 696.24 humidity 90.0 14400 > th dose independent rect. 23 1
692 696.38 wind 7.0 43200 > th dose dependent rect. 21 2
694 696.41 atmosphere 995.0 43200 < th dose dependent rect. 12 23
700 696.49 radiation 20.0 43200 > th dose independent rect. 10 1
702 696.59 atmosphere 995.0 43200 < th dose dependent rect. 9 23
705 696.61 wind 7.0 43200 > th dose independent rect. 21 2
709 696.64 wind 7.0 43200 < th dose independent rect. 21 2
715 696.68 wind 1.0 43200 > th dose independent rect. 21 1
716 696.68 atmosphere 995.0 43200 < th dose dependent no NA NA
721 696.73 radiation 30.0 43200 < th dose dependent rect. 10 1
734 696.98 humidity 70.0 43200 < th dose independent rect. 10 1
765 697.95 temperature 20.0 43200 > th dose independent rect. 6 1
766 697.95 temperature 20.0 43200 < th dose independent rect. 2 1
771 698.20 radiation 1.0 43200 < th dose dependent rect. 16 1
772 698.28 radiation 1.0 43200 < th dose dependent rect. 6 23
775 698.42 temperature 20.0 43200 > th dose independent rect. 2 1
776 698.43 radiation 1.0 43200 < th dose dependent rect. 6 13
777 698.43 radiation 1.0 43200 < th dose dependent rect. 6 16
783 698.50 temperature 20.0 43200 < th dose independent rect. 6 1
790 698.64 radiation 1.0 43200 < th dose independent rect. 6 11
791 698.65 radiation 1.0 43200 > th dose independent rect. 6 11
798 698.96 radiation 20.0 43200 < th dose dependent rect. 8 3
808 699.10 humidity 80.0 43200 < th dose independent rect. 16 2
811 699.16 radiation 1.0 43200 < th dose dependent rect. 8 10
837 699.62 temperature 20.0 43200 < th dose independent rect. 2 6
852 699.86 temperature 20.0 43200 > th dose independent rect. 2 6
854 699.94 atmosphere 1010.0 14400 < th dose independent rect. 9 1
855 699.94 radiation 1.0 43200 < th dose dependent sin 23 NA
856 699.96 temperature 20.0 43200 < th dose independent rect. 22 10
867 700.13 temperature 20.0 43200 > th dose independent rect. 21 11
890 700.38 temperature 20.0 43200 < th dose independent rect. 22 6
896 700.44 temperature 20.0 43200 > th dose independent rect. 5 3
915 700.60 wind 1.0 43200 < th dose independent rect. 19 3
918 700.63 temperature 20.0 43200 > th dose independent rect. 22 6
945 700.88 humidity 70.0 43200 > th dose independent rect. 10 1
952 700.96 radiation 1.0 43200 < th dose dependent rect. 18 23
985 701.20 radiation 20.0 43200 < th dose dependent rect. 8 6