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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0117400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : DNA-binding WRKY domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.26 (0.0354) R2 : 0.828
β1 : -4.06 (0.135) R2dD : 0.402 R2D : 0.262
β2 : 3.4 (0.0906) R2dC : 0.551 R2C : 0.465
β3 : -2.38 (0.168) R2dE : 0.0995 R2E : -0.0961
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.464 (0.081) R2dN8 : 0.0197 R2N8 : -0.0477
σ : 0.647
deviance : 192.99
__
_____
C
peak time of C : 7.33
E
wheather : temperature
threshold : 24.3
memory length : 742
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
191.26 0.65 9.28 -4.16 3.41 -2.29 0.672 0.558 -0.49 7.33 24.68 731 -- --
191.28 0.644 9.26 -4.07 3.39 -2.37 0.793 -- -0.456 7.34 24.3 756 -- --
192.25 0.646 9.28 -4.18 3.4 -2.28 -- 0.776 -0.492 7.33 24.49 734 -- --
192.99 0.647 9.26 -4.06 3.4 -2.38 -- -- -0.464 7.33 24.3 742 -- --
725.9 1.25 9.41 -4.54 -- -2.13 -- 1.17 -0.572 -- 25.4 2822 -- --
272.84 0.774 9.17 -3.41 3.19 -- 0.838 -- 0.00647 7.09 -- -- -- --
274.68 0.776 9.17 -3.39 3.2 -- -- -- 0.00436 7.07 -- -- -- --
727.42 1.26 9.37 -4.26 -- -2.21 -- -- -0.505 -- 25.2 2834 -- --
572.17 1.11 9.1 -- 3.22 -0.614 -- -- 0.283 7.18 24.3 577 -- --
813.18 1.33 9.24 -3.33 -- -- -- -- 0.062 -- -- -- -- --
578.23 1.12 9.08 -- 3.16 -- -- -- 0.382 7.14 -- -- -- --
1095.63 1.54 9.14 -- -- 1.26 -- -- 0.511 -- 19.63 257 -- --
1105.93 1.55 9.15 -- -- -- -- -- 0.432 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 183.64 temperature 30 720 < th dose dependent rect. 20 13
3 184.32 temperature 30 720 < th dose dependent rect. 21 11
13 185.08 temperature 15 720 > th dose dependent sin 10 NA
15 185.20 temperature 25 720 < th dose dependent rect. 20 19
18 185.35 temperature 25 720 < th dose dependent sin 9 NA
31 185.78 radiation 1 4320 > th dose independent rect. 18 12
40 186.02 temperature 15 720 > th dose dependent rect. 18 17
75 187.42 radiation 1 4320 < th dose dependent rect. 19 11
76 187.43 radiation 1 4320 < th dose dependent rect. 23 7
88 187.60 radiation 1 4320 < th dose dependent rect. 4 2
185 190.44 radiation 1 4320 < th dose independent rect. 18 12
220 191.50 temperature 25 720 < th dose dependent rect. 11 23
225 191.71 atmosphere 1015 43200 < th dose independent rect. 14 5
227 191.77 temperature 15 720 > th dose dependent rect. 23 6
228 191.78 temperature 25 720 < th dose dependent no NA NA
232 191.84 atmosphere 1015 43200 > th dose independent rect. 13 6
235 191.86 radiation 1 43200 < th dose independent rect. 18 11
242 191.97 radiation 1 4320 > th dose independent rect. 18 15
247 192.02 atmosphere 1015 43200 > th dose independent rect. 14 1
262 192.21 radiation 1 4320 < th dose dependent sin 10 NA
266 192.33 atmosphere 1015 43200 < th dose independent rect. 17 3
267 192.34 radiation 1 14400 < th dose dependent rect. 10 21
272 192.42 temperature 15 1440 > th dose dependent rect. 21 1
275 192.43 radiation 1 14400 < th dose dependent rect. 13 18
279 192.45 radiation 1 14400 < th dose dependent rect. 16 15
286 192.50 radiation 1 14400 < th dose dependent rect. 18 22
289 192.54 radiation 1 43200 > th dose independent rect. 18 11
290 192.54 radiation 1 14400 < th dose dependent sin 13 NA
312 192.67 temperature 30 1440 < th dose dependent rect. 21 1
357 192.91 radiation 1 14400 < th dose dependent rect. 4 16
402 192.99 radiation 1 14400 < th dose dependent rect. 21 23
414 193.01 radiation 1 14400 < th dose dependent no NA NA
451 193.13 radiation 1 14400 < th dose dependent rect. 6 23
461 193.18 radiation 1 4320 > th dose independent sin 11 NA
475 193.24 radiation 1 14400 < th dose dependent rect. 8 12
488 193.26 radiation 1 14400 < th dose dependent rect. 8 14
491 193.27 atmosphere 1015 43200 > th dose dependent rect. 19 3
507 193.30 radiation 1 14400 < th dose independent rect. 18 21
522 193.37 atmosphere 1015 43200 > th dose dependent rect. 20 1
523 193.37 radiation 1 14400 < th dose dependent rect. 16 4
553 193.42 atmosphere 1015 43200 > th dose dependent rect. 13 11
572 193.44 temperature 25 720 < th dose dependent rect. 2 23
582 193.47 radiation 1 14400 < th dose dependent sin 21 NA
599 193.51 wind 9 43200 > th dose independent rect. 18 7
611 193.55 temperature 15 1440 > th dose dependent rect. 18 5
627 193.59 radiation 1 14400 < th dose dependent rect. 13 7
631 193.60 radiation 1 14400 < th dose dependent rect. 14 5
672 193.66 wind 9 43200 > th dose independent rect. 18 9
673 193.66 atmosphere 1015 43200 > th dose dependent rect. 13 1
682 193.68 humidity 90 43200 > th dose independent rect. 5 2
703 193.72 humidity 90 43200 < th dose independent rect. 5 5
704 193.72 humidity 90 43200 < th dose independent rect. 5 7
713 193.74 radiation 1 14400 < th dose dependent rect. 4 11
837 194.01 humidity 90 43200 < th dose independent rect. 5 10
840 194.02 radiation 1 14400 > th dose independent rect. 18 21
903 194.22 wind 9 43200 > th dose dependent rect. 18 7
917 194.28 radiation 1 43200 < th dose independent rect. 18 8
936 194.33 wind 9 43200 < th dose independent rect. 18 7
942 194.34 radiation 1 43200 < th dose independent rect. 18 2
947 194.35 humidity 90 43200 > th dose independent rect. 5 7
951 194.36 radiation 1 14400 < th dose independent sin 12 NA
958 194.37 atmosphere 1015 43200 > th dose dependent rect. 23 3
966 194.41 humidity 90 43200 > th dose independent rect. 5 4
973 194.44 atmosphere 1015 43200 > th dose dependent rect. 12 5
977 194.45 radiation 1 14400 > th dose independent rect. 18 1
989 194.47 wind 9 43200 > th dose dependent rect. 18 12
999 194.50 radiation 1 14400 < th dose independent rect. 10 21