Os11g0114600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os11g0114600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.85 | 0.335 | 11.4 | 1.89 | 1.29 | -1.64 | 0.0713 | 2.08 | 0.623 | 4.54 | 18.74 | 103 | -- | -- |
| 54.17 | 0.343 | 11.4 | 1.6 | 1.3 | -1.84 | -0.136 | -- | 0.534 | 4.33 | 14.62 | 121 | -- | -- |
| 50.51 | 0.331 | 11.4 | 1.88 | 1.3 | -1.63 | -- | 2.09 | 0.598 | 4.4 | 18.49 | 129 | -- | -- |
| 54.11 | 0.343 | 11.4 | 1.56 | 1.29 | -1.71 | -- | -- | 0.519 | 4.41 | 16.51 | 130 | -- | -- |
| 106.87 | 0.481 | 11.3 | 2.42 | -- | -2.68 | -- | 4.12 | 0.85 | -- | 22.56 | 151 | -- | -- |
| 89.3 | 0.443 | 11.5 | 1.17 | 1.83 | -- | -0.145 | -- | 0.256 | 4.15 | -- | -- | -- | -- |
| 89.36 | 0.443 | 11.5 | 1.17 | 1.83 | -- | -- | -- | 0.257 | 4.15 | -- | -- | -- | -- |
| 114.86 | 0.499 | 11.4 | 1.83 | -- | -2.72 | -- | -- | 0.724 | -- | 18.21 | 151 | -- | -- |
| 109.81 | 0.491 | 11.5 | -- | 1.54 | -0.977 | -- | -- | 0.272 | 4.54 | 19.93 | 125 | -- | -- |
| 270.16 | 0.768 | 11.5 | 1.24 | -- | -- | -- | -- | 0.306 | -- | -- | -- | -- | -- |
| 125.42 | 0.524 | 11.5 | -- | 1.85 | -- | -- | -- | 0.127 | 4.14 | -- | -- | -- | -- |
| 185.4 | 0.634 | 11.5 | -- | -- | -2.13 | -- | -- | 0.343 | -- | 24.18 | 147 | -- | -- |
| 310.94 | 0.823 | 11.5 | -- | -- | -- | -- | -- | 0.168 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.58 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 21 |
| 17 | 46.77 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 65 | 50.59 | temperature | 20 | 270 | > th | dose dependent | sin | 5 | NA |
| 67 | 50.71 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 71 | 50.85 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 92 | 51.48 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 155 | 53.07 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 156 | 53.09 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 204 | 53.78 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 12 |
| 212 | 53.88 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 236 | 54.21 | temperature | 30 | 270 | < th | dose dependent | sin | 4 | NA |
| 276 | 54.64 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 293 | 54.77 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 301 | 54.82 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 329 | 55.19 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 17 |
| 395 | 55.71 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 405 | 55.87 | temperature | 20 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 411 | 55.92 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 448 | 56.25 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 473 | 56.46 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 538 | 56.86 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 547 | 56.93 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 567 | 57.02 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 588 | 57.18 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 608 | 57.25 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 635 | 57.40 | temperature | 20 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 650 | 57.48 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 20 |
| 732 | 57.84 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 838 | 58.28 | temperature | 10 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 863 | 58.35 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 914 | 58.49 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 937 | 58.54 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 949 | 58.55 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 11 |
| 954 | 58.57 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |