FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0113700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Protein kinase PK4.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.62 (0.442) R2 : -6.27
β1 : -12.8 (1.63) R2dD : 0.518 R2D : 0.258
β2 : 2.34 (1.76) R2dC : 0.863 R2C : 0.0454
β3 : 12.7 (1.44) R2dE : -3 R2E : -3.77
β4 : 6.64 (7.28) R2dD*C : 0.684 R2D*C : -0.032
β5 : 56.5 (6.24) R2dD*E : -3.86 R2D*E : -4.44
γ1 : -3.26 (0.943) R2dN8 : 0.185 R2N8 : 0.00683
σ : 1.53
deviance : 1061.01
__
_____
C
peak time of C : 13.4
E
wheather : radiation
threshold : 1
memory length : 7
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 22
open length of G : 7

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1061.01 1.53 5.62 -12.8 2.34 12.7 6.64 56.5 -3.26 13.4 1 7 22 7
1463.4 1.8 6.29 -8.99 3.13 1.69 2.77 -- -3.07 13.4 162.3 10 23 5
1495.47 1.81 6.3 -8.95 3.17 1.56 -- -2.36 -3.12 13.6 1 7 22 7
1462.24 1.79 6.24 -8.85 3.64 2.05 -- -- -2.93 13 154.3 5 21.1 6.9
1629 1.88 6.36 -9.04 -- -1.23 -- -3.85 -3.27 -- 149.8 483 20.7 7.03
1576.35 1.86 6.32 -9.06 1.65 -- 2.94 -- -3.15 13.6 -- -- -- --
1610.47 1.88 6.31 -8.97 1.65 -- -- -- -3.13 13.4 -- -- -- --
1661 1.9 6.35 -8.88 -- -1.09 -- -- -3.12 -- 186.6 106 22.7 9.55
3509.37 2.76 6.02 -- 4.34 2.59 -- -- -2 13 140.7 5 21 7.1
1777.99 1.97 6.34 -9.03 -- -- -- -- -3.17 -- -- -- -- --
3730.75 2.86 6.09 -- 1.81 -- -- -- -2.13 13.6 -- -- -- --
3775.41 2.86 6.11 -- -- -1.34 -- -- -2.11 -- 280.6 201 21.6 9.03
3931.04 2.93 6.11 -- -- -- -- -- -2.16 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1024.13 radiation 1 14400 < th dose dependent rect. 24 5
3 1031.26 wind 1 43200 < th dose dependent rect. 20 6
6 1031.89 radiation 1 14400 < th dose dependent rect. 21 8
9 1034.11 wind 1 43200 < th dose dependent rect. 22 4
16 1045.90 radiation 40 43200 < th dose independent rect. 13 2
17 1045.91 radiation 20 43200 < th dose independent rect. 7 2
18 1046.33 radiation 40 43200 < th dose independent rect. 11 21
21 1047.30 radiation 40 43200 < th dose independent rect. 11 12
53 1047.89 wind 1 43200 < th dose dependent rect. 24 1
54 1048.29 radiation 20 43200 < th dose independent rect. 17 17
57 1049.38 radiation 20 43200 < th dose independent rect. 5 5
71 1049.59 radiation 40 43200 < th dose independent sin 17 NA
99 1050.22 radiation 20 43200 < th dose independent rect. 15 19
148 1051.33 radiation 20 43200 < th dose independent sin 11 NA
177 1052.97 radiation 30 43200 < th dose independent rect. 11 1
217 1053.90 radiation 40 43200 < th dose independent rect. 5 17
272 1053.98 radiation 40 43200 < th dose independent no NA NA
280 1053.98 radiation 40 43200 < th dose independent rect. 22 23
290 1053.99 radiation 40 43200 < th dose independent rect. 18 23
291 1053.99 radiation 40 43200 < th dose independent rect. 20 23
360 1054.91 radiation 40 43200 < th dose independent rect. 15 23
373 1055.34 radiation 10 43200 > th dose dependent rect. 7 1
395 1056.19 radiation 10 43200 > th dose dependent rect. 17 16
409 1056.56 radiation 1 43200 > th dose dependent rect. 5 3
433 1056.69 radiation 20 43200 > th dose independent rect. 7 1
460 1057.11 radiation 20 43200 > th dose independent rect. 17 16
465 1057.22 radiation 20 43200 > th dose independent rect. 6 3
478 1057.22 radiation 40 43200 > th dose dependent rect. 11 21
495 1057.30 radiation 40 43200 > th dose dependent rect. 11 4
562 1057.74 radiation 20 43200 < th dose dependent rect. 4 4
565 1057.81 radiation 40 43200 < th dose dependent rect. 5 3
567 1057.83 radiation 20 43200 < th dose dependent rect. 19 13
587 1058.19 radiation 40 43200 > th dose dependent rect. 12 1
588 1058.20 radiation 40 43200 < th dose dependent rect. 19 13
591 1058.23 radiation 40 43200 < th dose dependent rect. 18 15
801 1059.36 radiation 20 43200 > th dose dependent rect. 15 19
837 1059.71 radiation 40 43200 > th dose dependent sin 16 NA
995 1061.01 radiation 1 1440 < th dose dependent rect. 22 7