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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0112400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Haem peroxidase, plant/fungal/bacterial family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.43 (0.0601) R2 : 0.627
β1 : -1.71 (0.27) R2dD : 0.0972 R2D : 0.163
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.26 (0.434) R2dE : 0.714 R2E : -0.218
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 16.9 (1.04) R2dD*E : 0.86 R2D*E : -0.511
γ1 : 0.47 (0.114) R2dN8 : 0.0297 R2N8 : -0.121
σ : 0.83
deviance : 317.86
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 1.273
memory length : 3983
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17.8
open length of G : 12

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
311.06 0.829 6.39 -1.99 0.327 4.77 -1.38 15.9 0.45 16.5 1.235 3982 17.9 12
471.55 1.01 5.75 -3.06 0.0282 1.68 -2.76 -- 0.813 15.2 15.72 1590 18.2 13.3
312.78 0.824 6.43 -1.97 0.329 4.95 -- 16.3 0.435 16.5 1.255 3983 17.8 12
462.44 1 5.78 -3.09 0.222 1.06 -- -- 0.872 16.2 12.32 1478 18.3 13.2
317.86 0.83 6.43 -1.71 -- 5.26 -- 16.9 0.47 -- 1.273 3983 17.8 12
499.84 1.05 5.83 -3.24 0.159 -- -1.6 -- 0.552 16.8 -- -- -- --
506.16 1.05 5.84 -3.25 0.168 -- -- -- 0.543 18.5 -- -- -- --
454.28 0.993 5.75 -3.1 -- 0.983 -- -- 0.748 -- 10 2868 18.7 14
421.59 0.956 5.8 -- 0.134 4.28 -- -- 0.74 18.9 -98.95 47520 17.7 11
507.63 1.05 5.84 -3.26 -- -- -- -- 0.54 -- -- -- -- --
784.74 1.31 5.76 -- 0.216 -- -- -- 0.905 17.6 -- -- -- --
390.23 0.92 5.8 -- -- 4.28 -- -- 0.725 -- -0.1272 41849 17.7 11
787.16 1.31 5.75 -- -- -- -- -- 0.901 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 320.88 radiation 1 4320 > th dose dependent rect. 18 12
2 321.88 radiation 40 14400 < th dose independent rect. 15 18
3 322.41 radiation 10 14400 < th dose independent rect. 17 1
5 322.54 radiation 10 14400 < th dose independent rect. 17 11
15 325.30 radiation 30 14400 < th dose independent rect. 7 1
16 325.56 radiation 40 14400 < th dose independent rect. 2 7
18 325.60 radiation 40 14400 < th dose independent rect. 6 3
19 325.64 radiation 40 14400 < th dose independent rect. 17 16
24 325.80 radiation 40 14400 < th dose independent rect. 23 10
32 326.63 radiation 1 4320 > th dose dependent rect. 4 2
57 328.49 wind 5 43200 > th dose dependent rect. 19 13
58 328.55 wind 5 43200 < th dose independent rect. 5 3
60 328.62 wind 5 43200 > th dose independent rect. 6 1
61 328.77 wind 5 43200 > th dose independent rect. 5 3
62 328.90 wind 5 43200 > th dose dependent rect. 19 17
64 329.00 wind 5 43200 < th dose independent rect. 6 1
65 329.00 humidity 70 14400 < th dose dependent rect. 18 13
66 329.09 radiation 1 14400 > th dose dependent rect. 18 1
76 329.11 humidity 70 14400 < th dose dependent rect. 18 3
78 329.12 wind 7 43200 > th dose dependent rect. 20 10
88 329.21 wind 5 43200 > th dose independent rect. 18 18
94 329.78 wind 5 43200 < th dose independent rect. 19 17
96 329.92 wind 5 43200 < th dose independent rect. 19 13
97 329.95 wind 5 43200 > th dose independent rect. 19 13
100 330.11 wind 9 43200 < th dose independent rect. 20 10
124 330.86 wind 5 43200 < th dose independent rect. 19 15
129 331.13 wind 5 43200 < th dose independent sin 8 NA
140 331.41 wind 5 43200 > th dose independent sin 9 NA
148 331.58 wind 9 43200 > th dose independent rect. 20 10
150 331.64 radiation 20 4320 < th dose dependent rect. 18 12
156 331.80 wind 3 43200 > th dose dependent sin 8 NA
172 332.15 wind 3 43200 > th dose dependent rect. 24 12
191 332.54 wind 5 43200 < th dose independent rect. 3 9
192 332.54 wind 5 43200 < th dose independent rect. 23 13
201 332.65 wind 7 43200 > th dose dependent rect. 20 5
204 332.77 wind 5 43200 > th dose independent rect. 3 9
213 332.84 wind 5 43200 > th dose independent rect. 23 13
231 332.96 wind 3 43200 > th dose dependent rect. 4 2
240 333.12 wind 3 43200 > th dose dependent rect. 2 10
243 333.14 wind 3 43200 > th dose dependent rect. 3 8
269 333.55 wind 5 43200 < th dose independent rect. 4 6
366 334.71 radiation 30 14400 > th dose independent rect. 7 1
397 334.96 radiation 10 4320 < th dose dependent rect. 18 1
470 336.03 radiation 10 4320 < th dose dependent rect. 18 6
500 336.51 radiation 30 4320 > th dose dependent rect. 15 17
514 336.70 wind 9 43200 < th dose independent rect. 19 5
516 336.74 radiation 20 4320 < th dose dependent rect. 2 4
523 336.80 wind 9 43200 < th dose dependent rect. 3 2
531 336.87 humidity 70 14400 < th dose independent rect. 19 12
539 337.05 humidity 60 14400 < th dose independent rect. 18 1
561 337.34 humidity 70 14400 < th dose independent rect. 19 3
596 337.53 humidity 60 14400 > th dose independent rect. 18 10
603 337.59 humidity 60 14400 > th dose independent rect. 18 14
623 337.78 humidity 60 14400 > th dose independent rect. 18 4
632 337.83 humidity 60 14400 > th dose independent rect. 18 6
710 338.53 radiation 20 4320 < th dose dependent rect. 20 10
719 338.68 humidity 60 14400 < th dose independent rect. 18 14
793 339.61 humidity 80 14400 > th dose dependent rect. 22 1
794 339.62 wind 5 43200 > th dose dependent rect. 10 1
875 340.67 wind 5 43200 > th dose independent rect. 9 1
951 341.42 wind 9 43200 < th dose dependent rect. 2 10
992 341.84 humidity 90 43200 > th dose dependent rect. 9 1