FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0112200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cationic peroxidase 1 precursor (EC 1.11.1.7) (PNPC1).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.08 (0.069) R2 : 0.477
β1 : 2.35 (0.254) R2dD : 0.104 R2D : 0.0522
β2 : 2.98 (0.178) R2dC : 0.375 R2C : 0.229
β3 : 2.47 (0.288) R2dE : 0.0997 R2E : -0.0764
β4 : 3.08 (0.649) R2dD*C : 0.0255 R2D*C : -0.00394
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.02 (0.147) R2dN8 : 0.0753 R2N8 : 0.0245
σ : 1.29
deviance : 766.36
__
_____
C
peak time of C : 1.55
E
wheather : humidity
threshold : 73
memory length : 1318
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 7.6
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
755.95 1.29 4.11 2.1 2.95 2.44 3.67 3.04 0.987 1.46 73 1303 8 --
766.36 1.29 4.08 2.35 2.98 2.47 3.08 -- 1.02 1.55 73 1318 7.6 --
802.36 1.32 4.09 2.15 2.82 2.42 -- 1.19 1.02 1.3 73 1275 8.6 --
801.65 1.32 4.11 2.28 3.16 2.74 -- -- 0.963 1.22 72.62 1278 7.41 --
861.05 1.37 4.12 2.18 -- 3.07 -- 1.52 0.749 -- 51.07 1950 8.14 --
880.14 1.39 4.1 2.25 2.51 -- 2.89 -- 0.936 2.29 -- -- -- --
910.91 1.41 4.11 2.17 2.51 -- -- -- 0.919 2.3 -- -- -- --
865.39 1.37 4.15 2.27 -- 3.42 -- -- 0.701 -- 55 1927 7.89 --
937.25 1.43 4.17 -- 3.22 2.74 -- -- 0.729 1.13 72.42 1259 7.48 --
1286.26 1.68 4.09 2.27 -- -- -- -- 0.98 -- -- -- -- --
1034.52 1.5 4.16 -- 2.56 -- -- -- 0.677 2.31 -- -- -- --
989.15 1.46 4.19 -- -- 3.74 -- -- 0.506 -- 66.77 1743 6.68 --
1422.38 1.76 4.14 -- -- -- -- -- 0.728 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 768.09 humidity 70 1440 < th dose independent rect. 13 19
3 768.55 humidity 70 1440 > th dose independent rect. 12 20
6 768.71 humidity 70 1440 < th dose independent rect. 13 7
29 769.54 humidity 70 1440 > th dose independent rect. 12 11
32 769.57 humidity 70 1440 > th dose independent rect. 12 8
37 769.69 humidity 70 1440 > th dose independent sin 15 NA
38 769.69 humidity 70 1440 < th dose independent sin 15 NA
57 770.42 humidity 80 720 > th dose independent rect. 20 1
109 774.19 humidity 50 1440 > th dose dependent rect. 15 1
116 774.27 humidity 80 720 < th dose dependent rect. 19 2
122 774.56 humidity 80 1440 < th dose dependent rect. 13 8
124 774.99 humidity 50 1440 > th dose dependent rect. 13 3
138 776.33 humidity 50 1440 > th dose dependent rect. 13 8
148 777.07 humidity 70 1440 > th dose independent rect. 17 15
152 777.16 humidity 90 1440 < th dose dependent rect. 15 1
169 777.77 humidity 90 1440 < th dose dependent rect. 13 4
209 779.13 humidity 80 720 < th dose independent rect. 20 1
233 779.50 humidity 80 1440 < th dose dependent sin 16 NA
269 779.97 humidity 70 1440 > th dose independent rect. 17 6
273 780.03 humidity 70 1440 > th dose independent rect. 17 3
441 783.71 humidity 50 1440 > th dose dependent sin 18 NA
493 785.12 humidity 70 1440 < th dose independent rect. 17 15
498 785.25 humidity 60 1440 < th dose independent rect. 14 1
539 786.01 humidity 60 1440 > th dose independent rect. 14 1
577 786.80 humidity 70 1440 < th dose independent rect. 17 3
637 787.80 humidity 90 720 < th dose independent rect. 22 1
671 788.39 humidity 70 1440 < th dose independent rect. 12 3
678 788.63 humidity 90 720 < th dose independent rect. 6 18
794 789.75 humidity 70 1440 > th dose independent rect. 12 3
805 789.85 humidity 90 720 > th dose independent rect. 6 18
889 790.61 humidity 70 720 > th dose dependent rect. 19 2
890 790.61 humidity 80 1440 < th dose dependent rect. 18 23
914 790.82 humidity 80 1440 < th dose dependent no NA NA
970 791.68 humidity 70 1440 > th dose independent rect. 17 23
974 791.79 humidity 70 1440 < th dose independent rect. 17 23
995 792.10 temperature 10 1440 > th dose dependent rect. 13 2