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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0109800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.19 (0.0379) R2 : 0.263
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.73 (0.107) R2dC : 0.09 R2C : 0.162
β3 : 1.2 (0.17) R2dE : 0.0993 R2E : 0.167
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.166 (0.0802) R2dN8 : 0.00917 R2N8 : -0.00218
σ : 0.708
deviance : 230.78
__
_____
C
peak time of C : 18.9
E
wheather : temperature
threshold : 29.53
memory length : 360
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
226.65 0.707 3.19 0.0431 0.745 1.07 1.28 0.605 0.151 19.2 29.35 333 -- --
226.64 0.701 3.19 0.00698 0.736 1.14 1.28 -- 0.145 19.2 29.2 333 -- --
230.68 0.707 3.18 0.046 0.734 1.11 -- 1.01 0.169 18.9 29.49 345 -- --
230.76 0.708 3.19 -0.0194 0.728 1.21 -- -- 0.163 18.9 29.5 360 -- --
249.05 0.735 3.19 -0.0679 -- 1.55 -- 0.259 0.0993 -- 27.42 433 -- --
247.04 0.737 3.21 0.129 1.04 -- 1.85 -- 0.0872 18.8 -- -- -- --
255.59 0.749 3.21 0.0995 1.05 -- -- -- 0.0931 18.6 -- -- -- --
248.97 0.735 3.18 -0.124 -- 1.59 -- -- 0.0918 -- 27.4 426 -- --
230.78 0.708 3.19 -- 0.73 1.2 -- -- 0.166 18.9 29.53 360 -- --
312.55 0.826 3.19 0.0744 -- -- -- -- 0.0719 -- -- -- -- --
255.85 0.748 3.21 -- 1.04 -- -- -- 0.082 18.6 -- -- -- --
249.37 0.735 3.18 -- -- 1.57 -- -- 0.107 -- 27.46 423 -- --
312.7 0.825 3.19 -- -- -- -- -- 0.0636 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 215.49 temperature 30.0 90 < th dose independent rect. 10 15
2 216.63 temperature 30.0 270 < th dose independent rect. 8 16
14 219.09 temperature 10.0 270 > th dose dependent rect. 12 7
19 219.58 temperature 30.0 270 < th dose independent rect. 16 21
28 220.32 temperature 30.0 270 < th dose independent rect. 16 9
33 220.54 humidity 50.0 4320 > th dose independent rect. 3 8
37 220.77 temperature 15.0 10 > th dose dependent rect. 15 6
69 221.77 humidity 70.0 90 > th dose independent rect. 17 8
76 221.82 wind 7.0 270 < th dose independent rect. 12 7
79 221.85 humidity 50.0 270 > th dose independent rect. 16 21
104 222.42 humidity 50.0 90 > th dose independent rect. 10 15
105 222.42 humidity 50.0 270 > th dose independent rect. 8 16
118 222.53 temperature 30.0 270 > th dose independent rect. 12 6
124 222.57 wind 1.0 270 > th dose independent rect. 12 7
130 222.65 wind 7.0 90 < th dose independent rect. 1 9
133 222.73 humidity 60.0 90 > th dose independent rect. 1 9
139 222.79 humidity 70.0 90 < th dose independent rect. 15 5
151 222.83 precipitation 0.1 270 < th dose independent rect. 12 7
152 222.83 precipitation 0.1 270 < th dose dependent rect. 12 7
187 223.10 precipitation 0.1 270 < th dose independent rect. 19 17
188 223.10 precipitation 0.1 270 < th dose dependent rect. 19 17
197 223.17 temperature 30.0 90 < th dose independent rect. 1 9
199 223.17 atmosphere 1015.0 90 < th dose dependent rect. 13 8
210 223.31 atmosphere 995.0 90 > th dose independent rect. 10 15
216 223.38 temperature 10.0 90 > th dose independent rect. 1 9
219 223.38 atmosphere 995.0 90 > th dose independent rect. 1 9
220 223.38 atmosphere 1015.0 90 < th dose independent rect. 1 9
221 223.38 temperature 10.0 90 > th dose independent rect. 10 15
231 223.50 precipitation 0.1 90 < th dose independent rect. 1 9
235 223.50 precipitation 0.1 90 < th dose dependent rect. 1 9
240 223.56 temperature 30.0 10 > th dose independent rect. 13 6
279 223.65 temperature 10.0 270 > th dose independent rect. 12 7
281 223.65 atmosphere 1015.0 270 < th dose independent rect. 12 7
282 223.65 temperature 10.0 270 > th dose independent rect. 19 17
283 223.65 atmosphere 995.0 270 > th dose independent rect. 19 17
315 223.91 temperature 25.0 90 > th dose dependent rect. 13 16
318 223.94 temperature 30.0 270 < th dose independent sin 18 NA
330 224.01 wind 9.0 270 < th dose independent rect. 19 17
333 224.05 wind 7.0 10 < th dose independent rect. 2 8
335 224.08 radiation 40.0 90 < th dose independent rect. 13 8
339 224.10 temperature 10.0 270 > th dose dependent rect. 15 1
352 224.19 humidity 70.0 10 > th dose independent rect. 18 8
384 224.35 precipitation 0.1 10 < th dose independent rect. 10 16
391 224.35 precipitation 0.1 10 < th dose dependent rect. 10 16
397 224.39 temperature 30.0 270 > th dose independent sin 18 NA
402 224.41 atmosphere 1015.0 270 < th dose dependent rect. 12 6
406 224.43 temperature 30.0 270 < th dose independent rect. 7 23
407 224.44 humidity 60.0 10 > th dose independent rect. 2 8
415 224.45 humidity 50.0 270 > th dose independent rect. 19 17
431 224.52 atmosphere 995.0 10 > th dose independent rect. 10 16
435 224.56 wind 9.0 270 < th dose dependent rect. 12 7
439 224.58 radiation 30.0 270 < th dose independent rect. 23 9
440 224.59 humidity 50.0 90 > th dose dependent rect. 1 9
467 224.68 temperature 15.0 270 > th dose independent rect. 23 9
470 224.68 atmosphere 1015.0 10 < th dose dependent rect. 14 7
471 224.69 temperature 30.0 270 > th dose independent rect. 15 1
474 224.70 wind 9.0 270 < th dose dependent rect. 13 5
475 224.71 humidity 70.0 90 > th dose independent rect. 11 14
500 224.84 atmosphere 995.0 270 > th dose independent rect. 23 9
501 224.84 temperature 10.0 270 > th dose independent rect. 8 15
503 224.85 wind 9.0 90 < th dose independent rect. 10 15
508 224.88 wind 7.0 270 < th dose independent rect. 15 1
519 224.90 temperature 10.0 10 > th dose independent rect. 2 8
522 224.90 atmosphere 995.0 10 > th dose independent rect. 2 8
523 224.90 atmosphere 1015.0 10 < th dose independent rect. 2 8
524 224.90 temperature 10.0 10 > th dose independent rect. 10 16
545 224.98 radiation 40.0 90 < th dose independent rect. 1 9
548 225.03 humidity 70.0 90 > th dose independent sin 14 NA
550 225.03 temperature 30.0 10 < th dose independent rect. 2 8
553 225.06 humidity 70.0 90 < th dose independent sin 14 NA
575 225.08 precipitation 0.1 90 < th dose independent rect. 10 15
578 225.08 precipitation 0.1 90 < th dose dependent rect. 10 15
584 225.11 radiation 10.0 270 < th dose independent rect. 16 9
594 225.15 precipitation 0.1 270 < th dose independent rect. 23 9
596 225.15 precipitation 0.1 270 < th dose dependent rect. 23 9
604 225.16 atmosphere 1015.0 270 < th dose dependent rect. 13 4
637 225.29 temperature 10.0 1440 > th dose independent rect. 3 8
640 225.29 atmosphere 995.0 1440 > th dose independent rect. 3 8
641 225.29 temperature 10.0 1440 > th dose independent rect. 11 16
690 225.50 temperature 25.0 90 > th dose dependent sin 16 NA
693 225.51 radiation 10.0 270 < th dose dependent rect. 17 8
774 225.73 temperature 10.0 270 > th dose dependent rect. 12 19
823 225.83 precipitation 0.1 270 < th dose independent rect. 8 15
824 225.83 precipitation 0.1 270 < th dose dependent rect. 8 15
871 225.98 atmosphere 1015.0 90 < th dose independent rect. 10 15
874 225.99 radiation 40.0 270 < th dose independent rect. 15 1
927 226.14 atmosphere 995.0 270 > th dose independent rect. 12 7
929 226.14 wind 7.0 270 < th dose independent rect. 13 18
935 226.14 radiation 40.0 270 < th dose dependent rect. 23 9
975 226.17 atmosphere 1015.0 270 < th dose independent rect. 19 17