FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0109600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function Cys-rich family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.35 (0.0353) R2 : 0.645
β1 : 1.03 (0.129) R2dD : 0.052 R2D : 0.0563
β2 : 2.05 (0.102) R2dC : 0.396 R2C : 0.525
β3 : 0.915 (0.119) R2dE : 0.0583 R2E : 0.201
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0218 (0.0753) R2dN8 : 8.79e-05 R2N8 : -0.00349
σ : 0.658
deviance : 199.66
__
_____
C
peak time of C : 18.9
E
wheather : humidity
threshold : 66.12
memory length : 279
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
197.99 0.661 5.35 1.07 2.06 0.823 0.239 0.889 0.023 18.9 66.7 280 -- --
199.26 0.657 5.35 1.05 2.07 0.886 0.376 -- 0.0169 18.9 66 279 -- --
198.13 0.656 5.35 1.07 2.06 0.829 -- 0.946 0.0222 18.9 66.55 279 -- --
199.66 0.658 5.35 1.03 2.05 0.915 -- -- 0.0218 18.9 66.12 279 -- --
296.4 0.802 5.27 1.01 -- 2.22 -- -0.0619 -0.15 -- 72.01 484 -- --
218.5 0.693 5.37 1.15 2.43 -- 0.936 -- -0.015 18.5 -- -- -- --
220.69 0.696 5.37 1.13 2.43 -- -- -- -0.0122 18.5 -- -- -- --
293.49 0.798 5.34 0.918 -- 2.25 -- -- -0.157 -- 72.62 493 -- --
227.45 0.702 5.38 -- 2 1.03 -- -- -0.0872 19 66.96 279 -- --
528.89 1.07 5.32 1.07 -- -- -- -- -0.0629 -- -- -- -- --
254.64 0.746 5.4 -- 2.42 -- -- -- -0.139 18.5 -- -- -- --
315.57 0.827 5.37 -- -- 2.35 -- -- -0.273 -- 72 503 -- --
559.3 1.1 5.35 -- -- -- -- -- -0.182 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 188.49 temperature 10 270 > th dose dependent rect. 2 14
8 190.87 temperature 30 270 < th dose dependent rect. 6 7
25 192.61 temperature 30 270 < th dose independent rect. 15 21
34 193.36 temperature 20 270 > th dose dependent rect. 9 8
44 193.82 temperature 30 270 < th dose independent rect. 6 14
72 194.77 temperature 30 270 < th dose dependent rect. 6 13
82 194.97 wind 7 270 < th dose independent rect. 2 14
83 194.97 humidity 50 270 > th dose dependent rect. 6 6
88 195.02 humidity 70 270 > th dose independent rect. 17 19
90 195.03 temperature 15 270 > th dose dependent sin 1 NA
114 195.30 temperature 25 270 > th dose dependent sin 1 NA
115 195.32 wind 1 270 > th dose dependent rect. 5 7
117 195.36 radiation 40 270 < th dose independent rect. 5 22
128 195.46 humidity 70 270 > th dose independent rect. 5 21
131 195.50 temperature 30 270 < th dose independent rect. 5 7
137 195.54 humidity 70 270 > th dose independent rect. 7 14
154 195.73 temperature 30 90 < th dose independent rect. 9 14
201 196.12 radiation 40 270 < th dose independent rect. 7 15
204 196.14 radiation 40 270 < th dose dependent rect. 5 22
206 196.16 humidity 50 270 > th dose dependent rect. 7 14
210 196.18 radiation 40 270 < th dose dependent rect. 6 20
232 196.42 radiation 40 270 < th dose independent rect. 6 7
266 196.72 radiation 20 270 < th dose independent rect. 6 20
279 196.80 humidity 70 270 > th dose independent rect. 6 6
280 196.81 wind 1 90 > th dose dependent rect. 9 3
288 196.86 radiation 40 270 < th dose independent rect. 17 20
312 197.00 radiation 40 270 < th dose dependent rect. 7 18
314 197.03 temperature 25 90 > th dose dependent sin 22 NA
315 197.03 radiation 40 270 < th dose dependent rect. 6 6
328 197.11 temperature 30 90 < th dose independent rect. 6 22
343 197.17 radiation 40 270 < th dose dependent rect. 7 4
376 197.35 radiation 20 270 < th dose independent rect. 7 18
400 197.46 wind 7 270 < th dose independent rect. 10 21
401 197.46 radiation 40 270 < th dose independent rect. 17 22
413 197.54 wind 1 90 > th dose dependent rect. 1 11
415 197.56 temperature 20 270 > th dose independent rect. 17 8
423 197.61 radiation 40 270 < th dose dependent rect. 7 16
434 197.66 wind 3 720 > th dose dependent rect. 11 1
447 197.71 humidity 70 270 < th dose independent rect. 9 9
449 197.72 humidity 70 270 < th dose independent sin 22 NA
475 197.79 temperature 30 270 < th dose independent rect. 6 19
481 197.81 temperature 25 90 > th dose dependent rect. 10 21
489 197.83 temperature 30 270 < th dose dependent sin 1 NA
515 197.93 radiation 30 720 < th dose independent rect. 24 9
527 197.97 temperature 25 30 > th dose dependent rect. 10 23
536 198.02 humidity 70 270 < th dose independent rect. 9 23
550 198.08 atmosphere 1010 270 < th dose independent rect. 16 9
616 198.26 temperature 10 270 > th dose dependent rect. 17 8
617 198.26 wind 9 270 < th dose dependent rect. 1 14
652 198.36 radiation 40 270 > th dose independent rect. 12 22
669 198.40 wind 3 90 > th dose dependent rect. 11 1
689 198.45 humidity 70 270 < th dose independent rect. 19 23
708 198.51 radiation 20 270 < th dose independent rect. 7 4
759 198.66 humidity 90 270 < th dose dependent rect. 10 7
776 198.71 humidity 70 270 < th dose independent rect. 6 12
790 198.72 temperature 15 1440 > th dose independent rect. 8 16
833 198.81 humidity 60 270 > th dose dependent rect. 6 19
834 198.82 humidity 50 90 > th dose dependent rect. 9 14
862 198.87 humidity 70 270 < th dose independent rect. 12 23
867 198.89 humidity 70 90 > th dose independent rect. 9 18
887 198.91 temperature 30 270 < th dose independent sin 1 NA
895 198.94 humidity 50 90 > th dose dependent rect. 6 21
909 198.97 wind 7 270 < th dose independent rect. 11 19
914 198.98 humidity 70 270 < th dose independent no NA NA
984 198.99 humidity 70 270 > th dose independent sin 21 NA
987 198.99 radiation 40 720 < th dose dependent rect. 24 10