Os11g0109400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Sodium/hydrogen exchanger family protein.
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Os11g0109400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Sodium/hydrogen exchanger family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.06 | 0.364 | 2.99 | -0.7 | 0.00895 | -1.76 | 0.442 | 9.58 | -0.0199 | 21.3 | 1000 | 694 | -- | -- |
| 75.49 | 0.408 | 2.89 | -0.158 | 0.0501 | -0.00929 | 0.232 | -- | -0.0434 | 22 | 1000 | 694 | -- | -- |
| 60.76 | 0.363 | 2.99 | -0.715 | 0.0093 | -1.74 | -- | 9.5 | -0.0232 | 22.1 | 1000 | 693 | -- | -- |
| 74.62 | 0.405 | 2.89 | -0.191 | 0.0625 | -0.173 | -- | -- | -0.0293 | 0.628 | 1002 | 1984 | -- | -- |
| 60.76 | 0.363 | 2.99 | -0.706 | -- | -1.73 | -- | 9.4 | -0.0204 | -- | 1000 | 693 | -- | -- |
| 75.49 | 0.407 | 2.89 | -0.157 | 0.0498 | -- | 0.233 | -- | -0.044 | 21.9 | -- | -- | -- | -- |
| 75.64 | 0.407 | 2.89 | -0.167 | 0.0565 | -- | -- | -- | -0.0454 | 0.3 | -- | -- | -- | -- |
| 74.44 | 0.402 | 2.89 | -0.211 | -- | -0.293 | -- | -- | -0.0206 | -- | 1002 | 5056 | -- | -- |
| 71.03 | 0.393 | 2.92 | -- | 0.0564 | -0.851 | -- | -- | -0.0533 | 23.8 | 991.5 | 3254 | -- | -- |
| 75.84 | 0.407 | 2.89 | -0.165 | -- | -- | -- | -- | -0.0445 | -- | -- | -- | -- | -- |
| 76.38 | 0.409 | 2.89 | -- | 0.0542 | -- | -- | -- | -0.0268 | 0.138 | -- | -- | -- | -- |
| 70.41 | 0.391 | 2.89 | -- | -- | -1.12 | -- | -- | -0.0105 | -- | 993.1 | 6595 | -- | -- |
| 76.56 | 0.408 | 2.89 | -- | -- | -- | -- | -- | -0.0262 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.11 | wind | 7.0 | 90 | > th | dose independent | rect. | 21 | 1 |
| 3 | 57.11 | wind | 7.0 | 90 | > th | dose dependent | rect. | 21 | 1 |
| 55 | 57.49 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 21 | 1 |
| 57 | 57.49 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 21 | 1 |
| 60 | 57.51 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 21 | 1 |
| 71 | 57.51 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 21 | 1 |
| 95 | 58.01 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 24 | 10 |
| 103 | 58.33 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 24 | 7 |
| 122 | 58.79 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 24 | 12 |
| 164 | 59.29 | wind | 9.0 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 165 | 59.29 | atmosphere | 995.0 | 4320 | < th | dose independent | rect. | 1 | 1 |
| 170 | 59.29 | atmosphere | 995.0 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 317 | 59.29 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 318 | 59.29 | atmosphere | 995.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 323 | 59.29 | atmosphere | 995.0 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 472 | 59.38 | atmosphere | 1000.0 | 720 | < th | dose independent | rect. | 16 | 2 |
| 495 | 59.51 | atmosphere | 1000.0 | 720 | < th | dose independent | rect. | 13 | 2 |
| 516 | 59.62 | atmosphere | 1000.0 | 720 | > th | dose independent | sin | 19 | NA |
| 521 | 59.65 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 13 | 8 |
| 543 | 59.71 | atmosphere | 995.0 | 4320 | < th | dose dependent | sin | 8 | NA |
| 544 | 59.72 | atmosphere | 1000.0 | 720 | < th | dose independent | sin | 19 | NA |
| 558 | 59.77 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 13 | 16 |
| 600 | 59.91 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 3 | 16 |
| 606 | 59.94 | wind | 7.0 | 30 | > th | dose independent | rect. | 18 | 4 |
| 613 | 59.96 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 8 | 16 |
| 713 | 60.27 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 12 | 23 |
| 741 | 60.35 | atmosphere | 1000.0 | 720 | > th | dose independent | no | NA | NA |
| 745 | 60.35 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 22 | 1 |
| 773 | 60.45 | atmosphere | 1000.0 | 720 | < th | dose dependent | rect. | 17 | 1 |
| 792 | 60.55 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 24 | 1 |
| 806 | 60.59 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 19 | 12 |
| 843 | 60.72 | atmosphere | 1000.0 | 720 | < th | dose independent | no | NA | NA |
| 847 | 60.75 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 19 | 15 |
| 866 | 60.90 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 3 | 23 |
| 891 | 61.13 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 21 | 23 |
| 926 | 61.34 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 7 | 23 |
| 935 | 61.40 | atmosphere | 1005.0 | 270 | < th | dose dependent | rect. | 20 | 1 |
| 937 | 61.41 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 19 | 17 |
| 939 | 61.43 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 949 | 61.53 | atmosphere | 1005.0 | 270 | < th | dose dependent | rect. | 20 | 3 |
| 953 | 61.55 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 9 | 8 |
| 996 | 61.84 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 16 | 23 |