Os11g0109000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein phosphatase 2C-like domain containing protein.
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Os11g0109000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein phosphatase 2C-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 128.61 | 0.533 | 4.23 | -0.626 | 0.803 | 2.53 | -0.435 | -1.4 | 0.0759 | 6.84 | 79.14 | 96 | 5 | 6.05 |
| 130.62 | 0.532 | 4.22 | -0.592 | 0.832 | 2.47 | -0.617 | -- | 0.0729 | 6.71 | 78.57 | 96 | 5.02 | 6.05 |
| 128.96 | 0.529 | 4.23 | -0.644 | 0.822 | 2.52 | -- | -1.55 | 0.0757 | 6.84 | 78.7 | 95 | 5 | 6.07 |
| 132.42 | 0.536 | 4.23 | -0.623 | 0.801 | 2.49 | -- | -- | 0.0668 | 6.73 | 77.88 | 95 | 5.02 | 6.08 |
| 147.38 | 0.565 | 4.26 | -0.617 | -- | 2.86 | -- | -1.57 | 0.06 | -- | 75.42 | 97 | 4.83 | 6.22 |
| 213.84 | 0.686 | 4.21 | -0.627 | 1.58 | -- | -0.923 | -- | 0.0706 | 7 | -- | -- | -- | -- |
| 216.04 | 0.688 | 4.21 | -0.644 | 1.57 | -- | -- | -- | 0.0732 | 7.04 | -- | -- | -- | -- |
| 150.66 | 0.572 | 4.25 | -0.624 | -- | 2.8 | -- | -- | 0.0467 | -- | 74.2 | 101 | 4.74 | 6.27 |
| 142.94 | 0.557 | 4.21 | -- | 0.77 | 2.47 | -- | -- | 0.133 | 6.72 | 77.41 | 94 | 5.02 | 6.17 |
| 346.17 | 0.869 | 4.24 | -0.613 | -- | -- | -- | -- | 0.102 | -- | -- | -- | -- | -- |
| 226.98 | 0.705 | 4.19 | -- | 1.57 | -- | -- | -- | 0.145 | 7.07 | -- | -- | -- | -- |
| 160.75 | 0.591 | 4.24 | -- | -- | 2.75 | -- | -- | 0.118 | -- | 73.41 | 98 | 4.78 | 6.3 |
| 356.08 | 0.881 | 4.22 | -- | -- | -- | -- | -- | 0.17 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 129.39 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 5 | 6 |
| 2 | 133.53 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 5 | 4 |
| 4 | 134.99 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 5 | 16 |
| 5 | 135.18 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 5 | 14 |
| 6 | 135.27 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 5 | 10 |
| 7 | 135.65 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 5 | 12 |
| 20 | 140.53 | humidity | 80.0 | 30 | > th | dose independent | rect. | 5 | 4 |
| 26 | 142.63 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 5 | 4 |
| 66 | 146.26 | humidity | 80.0 | 30 | > th | dose independent | rect. | 5 | 15 |
| 67 | 146.29 | radiation | 10.0 | 90 | < th | dose independent | rect. | 5 | 4 |
| 70 | 146.56 | humidity | 80.0 | 30 | > th | dose independent | rect. | 5 | 13 |
| 80 | 147.10 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 7 | 22 |
| 81 | 147.10 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 7 | 22 |
| 82 | 147.49 | humidity | 80.0 | 30 | > th | dose independent | rect. | 5 | 11 |
| 89 | 147.88 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 8 | 21 |
| 159 | 150.54 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 5 | 2 |
| 160 | 150.62 | wind | 9.0 | 90 | < th | dose independent | rect. | 7 | 22 |
| 199 | 151.93 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 5 | 3 |
| 202 | 151.97 | radiation | 1.0 | 270 | < th | dose independent | rect. | 4 | 9 |
| 203 | 152.00 | radiation | 1.0 | 270 | < th | dose independent | rect. | 4 | 14 |
| 207 | 152.07 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 5 | 6 |
| 208 | 152.09 | temperature | 20.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 227 | 152.51 | wind | 7.0 | 90 | < th | dose independent | rect. | 5 | 2 |
| 229 | 152.51 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 231 | 152.51 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 2 |
| 232 | 152.51 | humidity | 50.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 237 | 152.51 | temperature | 10.0 | 90 | > th | dose independent | rect. | 7 | 22 |
| 244 | 152.73 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 2 |
| 245 | 152.73 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 254 | 152.98 | wind | 9.0 | 10 | < th | dose independent | rect. | 8 | 21 |
| 261 | 153.14 | wind | 9.0 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 300 | 154.35 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 5 | 2 |
| 309 | 154.54 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 398 | 156.31 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 5 | 3 |
| 410 | 156.59 | humidity | 90.0 | 270 | > th | dose independent | rect. | 3 | 18 |
| 438 | 157.36 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 14 |
| 463 | 158.02 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 490 | 158.62 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 9 |
| 499 | 158.78 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 8 | 21 |
| 502 | 158.86 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 5 | 8 |
| 555 | 159.46 | radiation | 1.0 | 270 | > th | dose independent | sin | 1 | NA |
| 563 | 159.72 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 4 | 23 |
| 607 | 160.18 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 5 | 10 |
| 615 | 160.25 | wind | 1.0 | 90 | > th | dose independent | rect. | 8 | 21 |
| 670 | 161.03 | humidity | 80.0 | 90 | > th | dose dependent | sin | 0 | NA |
| 674 | 161.14 | radiation | 1.0 | 270 | < th | dose independent | sin | 1 | NA |
| 679 | 161.23 | humidity | 50.0 | 30 | > th | dose independent | rect. | 8 | 21 |
| 721 | 161.97 | wind | 1.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 729 | 162.08 | wind | 1.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 778 | 162.82 | wind | 9.0 | 10 | < th | dose dependent | rect. | 8 | 21 |
| 815 | 163.19 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 8 | 21 |
| 834 | 163.53 | humidity | 80.0 | 270 | > th | dose dependent | sin | 3 | NA |
| 857 | 163.72 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 898 | 163.94 | humidity | 90.0 | 270 | < th | dose independent | sin | 3 | NA |
| 942 | 164.49 | radiation | 1.0 | 10 | > th | dose independent | rect. | 5 | 3 |