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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0107400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Nodulin-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.3 (0.027) R2 : 0.862
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -3.98 (0.075) R2dE : 0.842 R2E : 0.844
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.397 (0.0569) R2dN8 : 0.0176 R2N8 : 0.02
σ : 0.508
deviance : 118.97
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 0.06
memory length : 470
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 13.8
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
104.01 0.479 11.3 -0.471 2.73 -1.51 0.915 0.49 -0.514 6.02 0.08027 226 8.97 --
103.72 0.474 11.3 -0.453 2.86 -1.45 0.649 -- -0.526 6.03 0.05942 204 8.4 --
104.82 0.477 11.3 -0.512 2.8 -1.47 -- -0.404 -0.521 5.99 0.08 225 8.52 --
104.67 0.477 11.3 -0.462 2.89 -1.44 -- -- -0.512 6.01 0.04001 204 8.3 --
219.21 0.69 11.6 -0.603 -- -3.91 -- 1.36 -0.411 -- 0.6533 386 9.8 --
140.19 0.555 11.3 -0.629 3.65 -- 1.1 -- -0.612 5.95 -- -- -- --
143.14 0.56 11.3 -0.62 3.66 -- -- -- -0.617 5.95 -- -- -- --
135.01 0.541 11.4 -0.782 -- -4.34 -- -- -0.464 -- 0.587 471 13.6 --
111.1 0.491 11.3 -- 2.83 -1.5 -- -- -0.506 6.04 0.05024 204 8.44 --
836.61 1.35 11.4 -0.512 -- -- -- -- -0.533 -- -- -- -- --
153.29 0.579 11.3 -- 3.65 -- -- -- -0.547 5.95 -- -- -- --
118.97 0.508 11.3 -- -- -3.98 -- -- -0.397 -- 0.06 470 13.8 --
843.52 1.36 11.4 -- -- -- -- -- -0.476 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 97.95 temperature 10.0 270 > th dose dependent rect. 12 20
5 99.66 temperature 20.0 270 > th dose independent rect. 12 8
9 99.91 temperature 20.0 90 > th dose independent rect. 14 19
16 100.95 atmosphere 1015.0 270 < th dose independent rect. 13 19
20 101.35 temperature 20.0 10 > th dose independent rect. 14 20
35 102.18 radiation 1.0 270 > th dose independent rect. 13 18
41 102.37 temperature 10.0 270 > th dose independent rect. 8 5
42 102.37 atmosphere 995.0 270 > th dose independent rect. 8 5
43 102.37 atmosphere 1015.0 270 < th dose independent rect. 8 5
45 102.43 precipitation 0.1 270 < th dose independent rect. 8 5
46 102.43 precipitation 0.1 270 < th dose dependent rect. 8 5
48 102.47 wind 1.0 270 > th dose independent rect. 8 5
56 102.63 temperature 10.0 10 > th dose dependent rect. 14 20
60 102.73 wind 9.0 270 < th dose independent rect. 13 19
64 102.80 wind 9.0 270 < th dose independent rect. 8 5
65 102.81 radiation 1.0 270 > th dose independent rect. 8 5
90 103.48 atmosphere 995.0 270 > th dose independent rect. 13 19
92 103.55 atmosphere 1010.0 270 < th dose independent rect. 23 9
103 103.67 precipitation 0.1 270 < th dose independent rect. 8 14
104 103.67 precipitation 0.1 270 < th dose dependent rect. 8 14
116 103.86 temperature 10.0 10 > th dose dependent rect. 15 17
118 103.87 temperature 10.0 270 > th dose dependent rect. 12 9
129 104.07 temperature 30.0 270 < th dose dependent rect. 8 17
135 104.18 precipitation 0.1 270 < th dose independent rect. 17 20
136 104.18 precipitation 0.1 270 < th dose dependent rect. 17 20
139 104.21 humidity 90.0 270 < th dose independent rect. 14 3
149 104.28 humidity 50.0 270 > th dose independent rect. 8 5
155 104.38 humidity 90.0 270 < th dose independent rect. 13 5
158 104.47 radiation 1.0 270 > th dose independent rect. 13 5
159 104.50 temperature 15.0 270 > th dose independent rect. 23 9
185 104.91 temperature 30.0 270 < th dose independent rect. 23 9
186 104.91 humidity 50.0 270 > th dose independent rect. 23 9
188 104.91 atmosphere 995.0 270 > th dose independent rect. 23 9
189 104.91 temperature 10.0 270 > th dose independent rect. 8 15
191 104.95 wind 9.0 270 < th dose independent rect. 23 9
192 104.98 precipitation 0.1 270 < th dose independent rect. 19 17
193 104.98 precipitation 0.1 270 < th dose dependent rect. 19 17
200 105.06 radiation 40.0 270 < th dose independent rect. 23 9
203 105.07 atmosphere 1015.0 10 < th dose independent rect. 15 19
219 105.27 radiation 1.0 270 > th dose independent rect. 14 3
236 105.37 humidity 50.0 270 > th dose independent rect. 13 19
261 105.63 humidity 50.0 270 > th dose independent rect. 9 2
262 105.63 wind 9.0 270 < th dose independent rect. 8 15
263 105.67 atmosphere 1010.0 270 < th dose independent rect. 12 7
265 105.70 radiation 40.0 90 < th dose independent rect. 14 19
274 105.84 humidity 50.0 270 > th dose dependent rect. 22 10
282 105.88 humidity 90.0 270 < th dose independent rect. 12 7
291 105.94 temperature 10.0 270 > th dose independent rect. 12 7
294 105.94 temperature 10.0 270 > th dose independent rect. 19 17
295 105.94 atmosphere 995.0 270 > th dose independent rect. 19 17
301 106.00 temperature 10.0 270 > th dose independent rect. 13 5
303 106.00 atmosphere 1010.0 270 < th dose independent rect. 13 5
305 106.00 temperature 10.0 270 > th dose independent rect. 18 19
310 106.04 atmosphere 995.0 270 > th dose independent rect. 18 19
318 106.07 atmosphere 995.0 90 > th dose independent rect. 15 18
321 106.09 precipitation 0.1 270 < th dose independent rect. 13 19
322 106.09 precipitation 0.1 270 < th dose dependent rect. 13 19
324 106.12 wind 9.0 270 < th dose independent rect. 12 7
329 106.19 wind 9.0 90 < th dose independent rect. 15 18
330 106.20 wind 9.0 270 < th dose independent rect. 13 5
333 106.23 wind 9.0 270 < th dose independent rect. 19 17
354 106.41 wind 9.0 270 < th dose independent rect. 18 19
364 106.50 wind 1.0 270 > th dose independent rect. 18 19
368 106.55 atmosphere 995.0 270 > th dose independent rect. 13 5
384 106.69 precipitation 0.1 270 < th dose independent rect. 23 9
386 106.69 precipitation 0.1 270 < th dose dependent rect. 23 9
402 106.87 wind 1.0 270 > th dose independent rect. 13 5
411 106.93 atmosphere 995.0 270 > th dose independent rect. 12 7
422 107.01 radiation 1.0 270 < th dose dependent sin 15 NA
425 107.08 humidity 50.0 270 > th dose independent rect. 13 6
429 107.10 precipitation 0.1 270 < th dose independent rect. 13 5
431 107.10 precipitation 0.1 270 < th dose dependent rect. 13 5
454 107.21 radiation 1.0 10 > th dose independent rect. 10 5
483 107.47 wind 1.0 10 > th dose independent rect. 10 5
490 107.53 temperature 10.0 10 > th dose independent rect. 10 5
492 107.53 atmosphere 995.0 10 > th dose independent rect. 10 5
493 107.53 atmosphere 1015.0 10 < th dose independent rect. 10 5
494 107.53 precipitation 0.1 10 < th dose independent rect. 10 5
496 107.53 precipitation 0.1 10 < th dose dependent rect. 10 5
502 107.57 wind 1.0 270 > th dose independent rect. 12 7
506 107.61 precipitation 0.1 270 < th dose independent rect. 12 7
509 107.61 precipitation 0.1 270 < th dose dependent rect. 12 7
513 107.67 temperature 30.0 270 < th dose independent rect. 8 4
522 107.69 precipitation 0.1 270 < th dose independent rect. 17 10
524 107.69 precipitation 0.1 270 < th dose dependent rect. 17 10
534 107.78 wind 1.0 270 > th dose independent rect. 19 17
535 107.79 atmosphere 995.0 10 > th dose independent rect. 15 19
540 107.83 humidity 50.0 270 > th dose independent rect. 19 17
560 107.91 wind 9.0 10 < th dose independent rect. 15 19
585 108.01 radiation 1.0 270 > th dose independent sin 15 NA
597 108.03 radiation 1.0 270 < th dose independent sin 15 NA
619 108.12 wind 9.0 10 < th dose independent rect. 10 5
633 108.19 humidity 50.0 270 > th dose independent rect. 18 19
645 108.26 humidity 90.0 270 < th dose independent rect. 15 1
652 108.32 radiation 40.0 270 < th dose independent rect. 8 5
661 108.36 radiation 1.0 270 < th dose dependent rect. 16 11
702 108.54 atmosphere 995.0 270 > th dose dependent rect. 8 5
711 108.58 humidity 50.0 270 > th dose independent rect. 14 3
717 108.61 humidity 90.0 90 < th dose independent rect. 9 5
723 108.64 wind 1.0 270 > th dose independent rect. 8 15
775 108.92 wind 9.0 270 < th dose independent rect. 17 10
807 109.04 temperature 10.0 1440 > th dose independent rect. 11 5
812 109.04 temperature 10.0 1440 > th dose independent rect. 16 19
819 109.06 temperature 10.0 270 > th dose independent rect. 17 10
820 109.06 radiation 20.0 270 < th dose independent rect. 17 10
823 109.06 temperature 10.0 270 > th dose independent rect. 3 14
824 109.06 atmosphere 1015.0 270 < th dose independent rect. 3 14
828 109.07 radiation 40.0 270 < th dose independent rect. 14 3
844 109.12 wind 9.0 270 < th dose independent rect. 3 14
851 109.17 radiation 40.0 270 < th dose dependent rect. 17 10
901 109.39 radiation 1.0 270 < th dose independent rect. 16 11
904 109.40 wind 1.0 270 > th dose dependent rect. 13 5
940 109.55 temperature 30.0 270 < th dose dependent sin 19 NA
946 109.58 temperature 10.0 10 > th dose dependent rect. 14 7
1000 109.77 radiation 40.0 90 < th dose independent rect. 14 5