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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0104200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.31 (0.0523) R2 : 0.00384
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.146 (0.11) R2dN8 : 0.00496 R2N8 : 0.00384
σ : 0.985
deviance : 445.78
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
431.11 0.976 3.33 -0.16 0.11 0.536 0.218 -2.37 -0.29 5.2 24.69 5656 -- --
439.19 0.976 3.34 0.0402 0.144 0.451 0.21 -- -0.26 5.43 25.26 9178 -- --
430.67 0.967 3.33 -0.171 0.117 0.532 -- -2.39 -0.29 5.18 32.58 5639 -- --
437.68 0.974 3.33 0.166 0.149 0.455 -- -- -0.2 5.31 30 10582 -- --
431.13 0.967 3.33 -0.132 -- 0.521 -- -2.42 -0.287 -- 34.41 5644 -- --
444.9 0.989 3.31 0.0398 0.116 -- 0.198 -- -0.143 4.79 -- -- -- --
445 0.988 3.31 0.0389 0.118 -- -- -- -0.144 4.73 -- -- -- --
434.67 0.971 3.33 0.342 -- 0.686 -- -- -0.231 -- 49.24 10509 -- --
436.27 0.973 3.32 -- 0.146 0.525 -- -- -0.192 4.95 49.75 10593 -- --
445.73 0.987 3.31 0.0434 -- -- -- -- -0.141 -- -- -- -- --
445.04 0.987 3.31 -- 0.118 -- -- -- -0.149 4.72 -- -- -- --
436.58 0.973 3.34 -- -- 0.593 -- -- -0.263 -- 49.29 10536 -- --
445.78 0.985 3.31 -- -- -- -- -- -0.146 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 417.87 radiation 1.0 10 < th dose dependent rect. 6 1
3 421.38 atmosphere 1005.0 30 > th dose independent rect. 5 1
5 422.17 humidity 50.0 90 > th dose independent rect. 6 23
6 422.18 radiation 1.0 90 < th dose independent rect. 14 1
7 422.18 radiation 1.0 90 < th dose dependent rect. 14 1
8 422.29 radiation 30.0 14400 < th dose independent rect. 17 1
11 423.63 radiation 1.0 90 > th dose independent rect. 4 1
21 423.63 radiation 1.0 90 > th dose dependent rect. 4 1
32 424.46 wind 1.0 30 < th dose dependent rect. 6 2
34 425.30 radiation 1.0 10 < th dose independent rect. 6 1
36 425.49 wind 1.0 30 < th dose independent rect. 6 2
39 425.78 humidity 80.0 90 < th dose dependent rect. 24 3
40 425.79 humidity 80.0 90 < th dose independent rect. 24 3
42 426.15 radiation 40.0 4320 > th dose independent rect. 15 1
60 426.32 humidity 60.0 14400 > th dose independent rect. 20 9
63 426.48 temperature 20.0 30 > th dose independent rect. 5 1
64 426.70 temperature 30.0 10 > th dose dependent rect. 17 17
67 427.04 radiation 1.0 30 < th dose dependent rect. 5 12
69 427.09 wind 1.0 90 > th dose independent rect. 6 23
70 427.15 radiation 1.0 30 > th dose dependent rect. 17 13
71 427.25 radiation 1.0 10 < th dose independent rect. 5 12
74 427.34 humidity 50.0 10 > th dose dependent rect. 17 12
75 427.40 humidity 80.0 90 < th dose dependent rect. 24 5
77 427.45 radiation 40.0 4320 > th dose dependent rect. 15 1
125 427.77 radiation 10.0 4320 < th dose independent rect. 19 10
129 427.86 humidity 50.0 90 < th dose independent rect. 17 19
138 428.00 humidity 50.0 90 < th dose dependent rect. 17 18
144 428.09 atmosphere 1000.0 30 > th dose dependent rect. 5 1
155 428.18 radiation 30.0 14400 < th dose independent rect. 17 13
159 428.22 humidity 50.0 90 < th dose dependent rect. 17 22
166 428.32 atmosphere 1010.0 10 < th dose independent rect. 5 2
169 428.40 radiation 40.0 14400 < th dose dependent rect. 19 10
171 428.47 humidity 50.0 90 > th dose independent sin 9 NA
174 428.66 radiation 30.0 4320 < th dose independent rect. 9 2
176 428.70 humidity 60.0 14400 > th dose independent rect. 20 6
177 428.71 precipitation 0.1 14400 > th dose dependent rect. 3 2
182 428.82 humidity 50.0 90 < th dose independent sin 9 NA
183 428.82 humidity 70.0 14400 > th dose independent rect. 22 8
186 428.86 precipitation 0.1 14400 < th dose independent rect. 4 1
187 428.86 precipitation 0.1 14400 < th dose dependent rect. 4 1
197 428.97 humidity 50.0 90 < th dose dependent sin 9 NA
203 429.01 wind 1.0 43200 < th dose dependent rect. 13 1
212 429.18 humidity 80.0 90 < th dose independent rect. 24 5
232 429.23 humidity 60.0 14400 > th dose independent rect. 20 1
235 429.26 precipitation 0.1 14400 > th dose independent rect. 4 1
236 429.26 humidity 60.0 10 > th dose independent rect. 17 12
239 429.29 radiation 30.0 14400 < th dose independent rect. 16 10
250 429.35 humidity 70.0 10 < th dose dependent sin 10 NA
258 429.40 radiation 30.0 14400 < th dose independent rect. 16 5
288 429.49 wind 1.0 43200 < th dose independent rect. 6 4
294 429.55 humidity 70.0 10 < th dose dependent rect. 17 17
315 429.65 radiation 10.0 43200 < th dose dependent rect. 3 1
322 429.72 atmosphere 1010.0 30 < th dose dependent rect. 2 1
324 429.73 humidity 90.0 10 > th dose independent rect. 2 1
326 429.74 radiation 1.0 10 < th dose independent rect. 15 1
329 429.75 radiation 1.0 30 < th dose dependent rect. 17 12
330 429.77 wind 9.0 1440 < th dose independent rect. 3 1
331 429.77 temperature 10.0 1440 > th dose independent rect. 3 1
334 429.77 temperature 30.0 1440 < th dose independent rect. 3 1
338 429.77 humidity 50.0 1440 > th dose independent rect. 3 1
347 429.77 atmosphere 995.0 1440 > th dose independent rect. 3 1
348 429.77 radiation 1.0 1440 < th dose independent rect. 3 1
368 429.77 temperature 10.0 1440 > th dose independent rect. 4 23
371 429.77 radiation 1.0 1440 < th dose dependent rect. 3 1
387 429.85 temperature 30.0 10 > th dose independent rect. 15 4
419 429.93 humidity 80.0 10 > th dose dependent rect. 2 1
444 430.05 radiation 40.0 4320 < th dose dependent rect. 9 2
449 430.08 wind 1.0 10 > th dose independent rect. 10 19
450 430.09 humidity 50.0 43200 > th dose independent rect. 17 2
451 430.09 humidity 50.0 43200 < th dose independent rect. 17 2
460 430.15 temperature 20.0 270 < th dose dependent rect. 24 1
462 430.15 radiation 20.0 14400 > th dose dependent rect. 16 2
484 430.21 humidity 50.0 43200 < th dose independent rect. 16 19
499 430.31 wind 3.0 720 < th dose dependent rect. 5 1
513 430.37 temperature 20.0 10 > th dose independent rect. 2 1
517 430.38 precipitation 0.1 90 < th dose independent rect. 6 23
518 430.38 precipitation 0.1 90 < th dose dependent rect. 6 23
520 430.39 humidity 50.0 43200 < th dose dependent rect. 16 1
523 430.40 radiation 40.0 14400 < th dose dependent rect. 24 5
524 430.40 radiation 40.0 14400 < th dose dependent rect. 22 7
527 430.42 wind 1.0 43200 < th dose independent rect. 5 6
529 430.42 radiation 40.0 14400 > th dose dependent rect. 8 1
533 430.48 radiation 30.0 4320 > th dose independent rect. 9 1
536 430.53 humidity 50.0 43200 > th dose independent rect. 16 19
549 430.61 humidity 60.0 14400 < th dose independent rect. 15 1
560 430.62 radiation 1.0 1440 < th dose dependent rect. 6 10
574 430.66 wind 1.0 30 < th dose independent rect. 2 1
590 430.67 humidity 70.0 14400 < th dose independent rect. 20 1
596 430.69 wind 1.0 30 > th dose independent rect. 5 1
597 430.69 humidity 60.0 14400 > th dose independent rect. 15 2
599 430.69 radiation 20.0 30 < th dose dependent rect. 5 5
601 430.72 humidity 60.0 14400 < th dose independent rect. 6 1
605 430.72 radiation 20.0 14400 > th dose independent rect. 17 1
656 430.72 humidity 60.0 14400 < th dose dependent rect. 6 1
658 430.72 humidity 60.0 14400 < th dose dependent rect. 20 1
749 430.81 radiation 30.0 4320 > th dose independent rect. 8 3
758 430.85 temperature 30.0 10 < th dose independent rect. 17 12
803 430.94 temperature 30.0 270 > th dose dependent rect. 13 2
829 431.04 humidity 50.0 43200 > th dose independent rect. 17 9
833 431.06 radiation 40.0 14400 < th dose dependent rect. 18 12
838 431.07 humidity 50.0 14400 < th dose dependent rect. 17 18
841 431.09 humidity 50.0 43200 > th dose independent rect. 17 6
846 431.10 wind 1.0 10 > th dose independent rect. 18 11
849 431.10 temperature 20.0 30 > th dose dependent rect. 2 1
850 431.10 humidity 80.0 720 > th dose dependent rect. 5 1
866 431.11 humidity 60.0 30 < th dose dependent rect. 17 2
894 431.17 precipitation 0.1 10 < th dose independent rect. 19 10
895 431.17 precipitation 0.1 10 < th dose dependent rect. 19 10
899 431.18 wind 1.0 43200 < th dose dependent rect. 7 1
902 431.20 humidity 70.0 14400 < th dose dependent rect. 15 2
905 431.20 radiation 10.0 14400 < th dose dependent rect. 18 12
911 431.23 radiation 30.0 4320 > th dose independent rect. 16 20
916 431.26 radiation 40.0 14400 < th dose independent rect. 15 18
919 431.26 humidity 70.0 10 > th dose dependent rect. 5 5
938 431.28 radiation 1.0 30 < th dose independent rect. 17 12
1000 431.40 humidity 70.0 10 > th dose dependent rect. 5 3